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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22330 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:2000072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003678 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA helicase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG1942 | KOG | DNA helicase, TBP-interacting protein | JGI | ISS | |
| PTHR11093 | Panther | RUVB-RELATED REPTIN AND PONTIN | JGI | ISS | |
| PF06068 | PFAM | TIP49 C-terminus | JGI | ISS | |
| UniRef100_G7J7J7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RuvB-like helicase n=1 Tax=Medicago truncatula RepID=G7J7J7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KGM6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGM6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g02170 not represented in the dataset |
Glyma07g02170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g21830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g019000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g02170.3 sequence type=transcript gene model=Glyma07g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCTTTCTTGAAGCGGTTAATTACTGCGAATACATTGCAAAAAATTTCAGCAAAAGTACACAAGACTGTATCTTAACTTAAGCAAAAGAGAGGATCTGGGATTCTCACACAGGCAGCAATATAGCAACACACTATTTGTTAAAAGGGAATGTTTGTTTCTCAGAGTAGATTATCAAAAAAATATGACTCCGTTTCTTTGAGCTTTGTGTATTATATGTTGTATAGTCTTGGTTTTAGAGAAACGTGGATTGGGTGGATGAGAATGTGTATAGAGACAGCTTCCGTTTTTATTCTCGTAAATGGAAGCCTGACTTAAGAGTTTTCTTCACAAAAAGGATTGAGACAAGAACACCCATTAATTCTTTTTCTTTTAATTGTGACGGATGAACTTAGTGGACATATGAGATAAATGGTGGGAAGTAATTTCTTCAAAAGCTACAAGGTGGGAAATGAATTGTTGAAGTGTCCGCTGCTGCAAATTGCAAAGTGCAAAACCTGAGAGAGAAAGAGAGAAAAATGGAGAAGATGAAAATAGAAGAGGTTCAGTCAACCACGAAGAAACAGCGTGTTGCTACCCACACTCACATTAAAGGCTTAGGTCTCGAGGCGAGTGGAAAAGCATTGCCTTTTGCTGCTGGGTTCGTGGGACAAGTTGAGGCGAGAGAAGCATCTGGTCTTGTGGTTGACATGATACGGCAGAAGAAGATGGCCGGCCGGGCACTTCTTCTCGCCGGACCACCCGGAACCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAGGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGAAGACCGAGGTTCTCATGGAAAATTTTAGACGGGCCATTGGTCTGCGTATTAAGGAAAACAAGGAAGTATATGAAGGAGAGGTCACCGAGCTCTCTCCGGAAGAAACTGAGAGTGTTACAGGTGGTTATGGTAAAAGTATTAGCCATGTGATCATTGGTTTGAAAACAGTGAAAGGAACCAAGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAAGGGTGGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGGATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGACAAGATATTCTGTCTCTTATGGGTCAGATGATGAAGCCTAGGAAAACAGAGATCACTGACAAGTTGAGGCAAGAAATTAACAAGGTTGTCAACCGATATATTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGTTTAGCTTTCCTTGGGGAGATTGGACAACGAACATCTTTAAGGCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGGCGGATCTTGAGGAAGTTTGTACGCTATACTTGGATGCCAAATCATCAGCCAGGTTACTTCAAGAGCAGCAGGAGAAATACATTTCATAATATTATTTTCCAACTGTTGCGATGGCTGGTGGTTGGGTTTGAATTACAACCAGTTTGTTTATTGCTTCTATACTGTCTCCTGCATGATTGAGATAATCGGTTCAAGGGATACATCTGGATATTATCGATGGTAGCAGGAACCTGAGATAAAGAACTTGGCTCGTTGGATAGCAATTACATGGTTAAAGTGTGCTGTAACTTTGTTACTTAATTCATTTTAGGATTCTTTTTCATGATGTTTTTGATGACTGAAAATGAAAAACAACGTGGAAATGTAATGAGGCAGTTATGTTGATACTGGACTTAAATGTCTTTTGATCTATCCCTTCTACAACTTTCTAATGTCATTTGGAATATTTAAATATTTTACGATGTGCTTAACATTTATGAAAATCCTCGACTTCCCTTTGTCTTG
>Glyma07g02170.2 sequence type=CDS gene model=Glyma07g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGATGAAAATAGAAGAGGTTCAGTCAACCACGAAGAAACAGCGTGTTGCTACCCACACTCACATTAAAGGCTTAGGTCTCGAGGCGAGTGGAAAAGCATTGCCTTTTGCTGCTGGGTTCGTGGGACAAGTTGAGGCGAGAGAAGCATCTGGTCTTGTGGTTGACATGATACGGCAGAAGAAGATGGCCGGCCGGGCACTTCTTCTCGCCGGACCACCCGGAACCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAGGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGAAGACCGAGGTTCTCATGGAAAATTTTAGACGGGCCATTGGTCTGCGTATTAAGGAAAACAAGGAAGTATATGAAGGAGAGGTCACCGAGCTCTCTCCGGAAGAAACTGAGAGTGTTACAGGTGGTTATGGTAAAAGTATTAGCCATGTGATCATTGGTTTGAAAACAGTGAAAGGAACCAAGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAAGGGTGGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGGATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGACAAGATATTCTGTCTCTTATGGGTCAGATGATGAAGCCTAGGAAAACAGAGATCACTGACAAGTTGAGGCAAGAAATTAACAAGGTTGTCAACCGATATATTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGTTTAGCTTTCCTTGGGGAGATTGGACAACGAACATCTTTAAGGCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGGCGGATCTTGAGGAAGTTTGTACGCTATACTTGGATGCCAAATCATCAGCCAGGTTACTTCAAGAGCAGCAGGAGAAATACATTTCATAA >Glyma07g02170.3 sequence type=CDS gene model=Glyma07g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGATGAAAATAGAAGAGGTTCAGTCAACCACGAAGAAACAGCGTGTTGCTACCCACACTCACATTAAAGGCTTAGGTCTCGAGGCGAGTGGAAAAGCATTGCCTTTTGCTGCTGGGTTCGTGGGACAAGTTGAGGCGAGAGAAGCATCTGGTCTTGTGGTTGACATGATACGGCAGAAGAAGATGGCCGGCCGGGCACTTCTTCTCGCCGGACCACCCGGAACCGGCAAGACGGCGTTAGCTCTTGGGATAAGCCAGGAGCTTGGCACCAAGGTTCCTTTCTGCCCAATGGTTGGTTCTGAAGTTTACTCCTCAGAAGTAAAGAAGACCGAGGTTCTCATGGAAAATTTTAGACGGGCCATTGGTCTGCGTATTAAGGAAAACAAGGAAGTATATGAAGGAGAGGTCACCGAGCTCTCTCCGGAAGAAACTGAGAGTGTTACAGGTGGTTATGGTAAAAGTATTAGCCATGTGATCATTGGTTTGAAAACAGTGAAAGGAACCAAGCAACTCAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTGGGGATGTAATATACATTGAGGCAAATAGTGGGGCTGTAAAAAGGGTGGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGGATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGACAAGATATTCTGTCTCTTATGGGTCAGATGATGAAGCCTAGGAAAACAGAGATCACTGACAAGTTGAGGCAAGAAATTAACAAGGTTGTCAACCGATATATTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGAGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGTTTAGCTTTCCTTGGGGAGATTGGACAACGAACATCTTTAAGGCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGGCGGATCTTGAGGAAGTTTGTACGCTATACTTGGATGCCAAATCATCAGCCAGGTTACTTCAAGAGCAGCAGGAGAAATACATTTCATAA
>Glyma07g02170.2 sequence type=predicted peptide gene model=Glyma07g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKMKIEEVQSTTKKQRVATHTHIKGLGLEASGKALPFAAGFVGQVEAREASGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMTSPHGIPVDLLDRLVIIRTQTYGPAEMIQILAIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASIVAKMNGRDNICKADLEEVCTLYLDAKSSARLLQEQQEKYIS* >Glyma07g02170.3 sequence type=predicted peptide gene model=Glyma07g02170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKMKIEEVQSTTKKQRVATHTHIKGLGLEASGKALPFAAGFVGQVEAREASGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMTSPHGIPVDLLDRLVIIRTQTYGPAEMIQILAIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASIVAKMNGRDNICKADLEEVCTLYLDAKSSARLLQEQQEKYIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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