Glyma07g02130 - SoyBase

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Report for Sequence Feature Glyma07g02130

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1479217
stop:	1482235
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g02130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16190	AT	Annotation by Michelle Graham. TAIR10: Isochorismatase family protein \| chr3:5489883-5491195 REVERSE LENGTH=196	SoyBase	E_val: 1.00E-99	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG4003	KOG	Pyrazinamidase/nicotinamidase PNC1	JGI		ISS
PTHR11080	Panther	PYRAZINAMIDASE/NICOTINAMIDASE	JGI		ISS
PF00857	PFAM	Isochorismatase family	JGI		ISS
UniRef100_F4YFC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isochorismatase hydrolase family protein n=1 Tax=Camellia sinensis RepID=F4YFC0_CAMSI	SoyBase	E_val: 1.00E-102	ISS
UniRef100_I1KGM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KGM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g02130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g02130

Paralog	Evidence	Comments
Glyma08g21781	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g02130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g018600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g02130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g02130

Limit To All Plant Sequences

>Glyma07g02130.2   sequence type=transcript   gene model=Glyma07g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAAACAGAAGCAATATATGCAAATGCAAGTGTTTGACTCAGGTAGAAACAGAACAGAAGCATCAATTATCAGTTATCAGCATGGTCAAAACTGTAGTTTGGTCCACTTTTGTGAGACCGCAATATAAACCTGCACATTTCAATCACTCACCCCTTCCATTTCTGAAGCTCAGTACACCCAATTTGAGCTTTCGGTAATTCCCTTTTCTCTCTATTTTTCCTTTTTTCCCCCTATTTATGTGAGGTTCATGTTTCAAGTTCCCGTGCAGTGGGACCAACACAGTACATAATAAGCGATCCAATTGGCCAAAACCTTTGTCACTGCGCTCAAAATCTGTTCTTGCTGTTGCTGGGGCTGACCCTTTGGAAATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTAGTAAAAGGAGGGAAAGACATTGTCCCAAATGTTATTAAGGCTGTCGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAAACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCAGTCCTTCAAGGAGCAGGAATTAATAGTCTTGTGGTCACTGGTGTTCAAACTCCTAACTGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGGAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGCTTGATCTATATGAACTATGAAGCATGCTACTTTTTGCACCCAGTGGTGTACTGGTGTTCAATTCCAAGACTCAAGAAAGGTTTGAAGTGAAGCAAACGTATCTATGTTTACTGCATAATAAAATGATTTACATGGCTAAGTTTGTTTATTTTGGTATTCACTTCACTTTTGTTGTGACTACTATGAACTTATTTTTTCTAGTCCAATGCACTCCAATTTAGAAAAACCCCTAGTTGCTAAACTAAGCTCAAATCTGTTCTTAAAAATTCTGATCATCCATGCAACCCAACTGCATTTTCATTCTTCAAATACGCTCCCAAATGTCTGTTATGGGGAAAAAAATTCTTAATTCATCGAAGCTAATATCAGGTGAGTTTTTTCT

Coding sequences of Glyma07g02130

Limit To All Plant Sequences

>Glyma07g02130.1   sequence type=CDS   gene model=Glyma07g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCAAAACTGTAGTTTGGTCCACTTTTGTGAGACCGCAATATAAACCTGCACATTTCAATCACTCACCCCTTCCATTTCTGAAGCTCAGTACACCCAATTTGAGCTTTCGTGGGACCAACACAGTACATAATAAGCGATCCAATTGGCCAAAACCTTTGTCACTGCGCTCAAAATCTGTTCTTGCTGTTGCTGGGGCTGACCCTTTGGAAATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTAGTAAAAGGAGGGAAAGACATTGTCCCAAATGTTATTAAGGCTGTCGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAAACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCAGTCCTTCAAGGAGCAGGAATTAATAGTCTTGTGGTCACTGGTGTTCAAACTCCTAACTGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGGAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGCTTGA

>Glyma07g02130.2   sequence type=CDS   gene model=Glyma07g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTAGTAAAAGGAGGGAAAGACATTGTCCCAAATGTTATTAAGGCTGTCGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAAACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCAGTCCTTCAAGGAGCAGGAATTAATAGTCTTGTGGTCACTGGTGTTCAAACTCCTAACTGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGGAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGCTTGA

Predicted protein sequences of Glyma07g02130

Limit To All Plant Sequences

>Glyma07g02130.1   sequence type=predicted peptide   gene model=Glyma07g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKTVVWSTFVRPQYKPAHFNHSPLPFLKLSTPNLSFRGTNTVHNKRSNWPKPLSLRSKSVLAVAGADPLEMAEDWNRTALLVIDMQKDFIEDGGPMLVKGGKDIVPNVIKAVDVARQRGILIVWVVREHDPLGRDVELFRRHLYAAGKVGPTSKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHSVLQGAGINSLVVTGVQTPNCIRQTVYDAVALDYQPVTVIVDATAAATPDIHLANVFDMENIGVATPTLQEWSEPKA*

>Glyma07g02130.2   sequence type=predicted peptide   gene model=Glyma07g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDWNRTALLVIDMQKDFIEDGGPMLVKGGKDIVPNVIKAVDVARQRGILIVWVVREHDPLGRDVELFRRHLYAAGKVGPTSKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHSVLQGAGINSLVVTGVQTPNCIRQTVYDAVALDYQPVTVIVDATAAATPDIHLANVFDMENIGVATPTLQEWSEPKA*

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