Glyma07g02080 - SoyBase

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Report for Sequence Feature Glyma07g02080

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1440170
stop:	1443422
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g02080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29080	AT	Annotation by Michelle Graham. TAIR10: phytochrome-associated protein 2 \| chr4:14323665-14325213 REVERSE LENGTH=305	SoyBase	E_val: 2.00E-99	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006417	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translation	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0048438	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral whorl development	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_G7IUP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive protein IAA n=2 Tax=Medicago truncatula RepID=G7IUP2_MEDTR	SoyBase	E_val: 3.00E-123	ISS
UniRef100_UPI0002337F23	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337F23 related cluster n=1 Tax=unknown RepID=UPI0002337F23	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g02080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g02080

Paralog	Evidence	Comments
Glyma08g21740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g02080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g018100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g02080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g02080

Limit To All Plant Sequences

>Glyma07g02080.2   sequence type=CDS   gene model=Glyma07g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTACACCCTTGGAACATGATTACATAGGTTTATCAGAGGCTCCATCCATGGAAAAAAGCTGTGACAAGATATCCTCTTCGGTTTCCTCCAACCTTTCTTCTGAGGATGAGAACACTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGCTTGCCCGGTTCTGAGTCTCCTGAGAACAACAAATTAGGGATCTCTCTCTTTGGCAAGGATTTGCAGAATAATGGCTATTCTTCTGCTTCTTCAACCCCTTCCAACAAGAACCTCAAGAGGGGCTTCTCTGATGCCATTAGCTCTTCTTCTTCCTCTTCTCGGAAATGGATTTTCTCCCAGAGTGATGCGGCAGCAACTGAGGCTGATTTGGAAAATGGTTCTAATAATACCTCTGCACGATGCAACAGAGAGGTTGATATGGTTCCTCACTACGAGAAACCAGCTCAGGTTGCTGCAACAAATGACCATGCTACTGTTCCTGCTCCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACACGATGGCCTATAATTTGGCAAAATGCAACAACGAAACTGAGGAGAAACCAGGAGTAGCTTGTCTTTATGTTAAGGTCAGCATGGATGGTGCTCCGTATCTCAGAAAGGTTGATCTGAAAACCTACAGCAACTATATTGAACTTTCTTCAGGTCTTGAGAAAATGTTCAGCTGCTTCACCATTGGTCAATGCAATTCTCGTGCACTTCCTGGGAAAGATGGATTAAGTGAGAGTGCATTCAGGGATATTGTTGATGGCTCTGAATATGTTCTTACATATGTAGATAAAGAAGGAGACTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCACTGAGTCATGCAACAAACTAAGGATAATGAAAGGGTCCGAGGCAATCGGGCTAGCTCCAAGGGGTATGGAAAAATGTAGGAGCCAATACTAG

Predicted protein sequences of Glyma07g02080

Limit To All Plant Sequences

>Glyma07g02080.2   sequence type=predicted peptide   gene model=Glyma07g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTPLEHDYIGLSEAPSMEKSCDKISSSVSSNLSSEDENTSSLNFKETELRLGLPGSESPENNKLGISLFGKDLQNNGYSSASSTPSNKNLKRGFSDAISSSSSSSRKWIFSQSDAAATEADLENGSNNTSARCNREVDMVPHYEKPAQVAATNDHATVPAPKAQVVGWPPIRSFRKNTMAYNLAKCNNETEEKPGVACLYVKVSMDGAPYLRKVDLKTYSNYIELSSGLEKMFSCFTIGQCNSRALPGKDGLSESAFRDIVDGSEYVLTYVDKEGDWMLVGDVPWEMFTESCNKLRIMKGSEAIGLAPRGMEKCRSQY*

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