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Report for Sequence Feature Glyma07g02060

Feature Type:gene_model
Chromosome:Gm07
Start:1435523
stop:1437697
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g02060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16240AT Annotation by Michelle Graham. TAIR10: delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250 SoyBaseE_val: 7.00E-139ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0015840GO-bp Annotation by Michelle Graham. GO Biological Process: urea transport SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0000326GO-cc Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009705GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0042807GO-cc Annotation by Michelle Graham. GO Cellular Compartment: central vacuole SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015200GO-mf Annotation by Michelle Graham. GO Molecular Function: methylammonium transmembrane transporter activity SoyBaseN/AISS
GO:0015204GO-mf Annotation by Michelle Graham. GO Molecular Function: urea transmembrane transporter activity SoyBaseN/AISS
GO:0015250GO-mf Annotation by Michelle Graham. GO Molecular Function: water channel activity SoyBaseN/AISS
KOG0223 KOG Aquaporin (major intrinsic protein family) JGI ISS
PTHR19139Panther AQUAPORIN TRANSPORTER JGI ISS
PTHR19139:SF30Panther AQUAPORIN-7 JGI ISS
PF00230PFAM Major intrinsic protein JGI ISS
UniRef100_C6SXY1UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXY1_SOYBN SoyBaseE_val: 2.00E-168ISS
UniRef100_G7LFV9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin TIP2-1 n=1 Tax=Medicago truncatula RepID=G7LFV9_MEDTR SoyBaseE_val: 9.00E-152ISS

Expression Patterns of Glyma07g02060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g02060
ParalogEvidenceComments
Glyma08g21730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g02060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g018000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g02060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g02060
>Glyma07g02060.3   sequence type=CDS   gene model=Glyma07g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCATTGCATTCGGACGCTTGGATGATTCTTTCAGTTTAACCTCAATCAAGGCCTATATTGCTGAGTTCCATTCAACCTTGCTCTTTGTTTTTGCCGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCTGCTGGGTTACTGGCAGTTGCTATTTGCCACGGTTTTGCACTCTTTGTTGCAGTTTCTGTTGGTGCCAACATCTCTGGTGGCCATGTCAACCCTGCTGTGACTTTTGGATTGGCTCTTGGTGGCCACATCACCATCCTCACTGGCTTCTTCTACTGGATTGCACAGCTTCTTGGCTCCATCGTGGCATGTTTTCTTCTCAACTATGTCACAGGAGGCTTGCCAACTCCAATCCACAGTGTGGCTTCTGGGGTTGGAGCTGTTGAAGGAGTTGTGACCGAGATCATCATCACATTTGGTTTGGTGTACACAGTGTATGCCACAGCAGCAGACCCTAAGAAGGGATCATTGGGAACCATTGCACCAATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTGGCAGCAGGGCCATTCTCTGGCGGCTCGATGAACCCGGCACGCTCCTTTGGGCCTGCAGTTGTTAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTTATTGGTGGTGGTTTGGCTGGCCTTATCTACGGCAATGTCTTCATTCGCTCTGACCATGCACCTCTTTCCAGTGAATTTTGA
Predicted protein sequences of Glyma07g02060
>Glyma07g02060.3   sequence type=predicted peptide   gene model=Glyma07g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGIAFGRLDDSFSLTSIKAYIAEFHSTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGFFYWIAQLLGSIVACFLLNYVTGGLPTPIHSVASGVGAVEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYGNVFIRSDHAPLSSEF*






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