SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g01980): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g01980): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g01980

Feature Type:gene_model
Chromosome:Gm07
Start:1377843
stop:1380633
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g01980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16300AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr3:5525491-5526207 REVERSE LENGTH=212 SoyBaseE_val: 5.00E-54ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF33Panther NADH DEHYDROGENASE I CHAIN G JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_B9GXD6UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein POPTRDRAFT_553757 n=1 Tax=Populus trichocarpa RepID=CSPLO_POPTR SoyBaseE_val: 2.00E-98ISS
UniRef100_I1KGK4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGK4_SOYBN SoyBaseE_val: 9.00E-149ISS

Expression Patterns of Glyma07g01980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g01980 not represented in the dataset
Glyma07g01980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g01980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g017000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g01980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g01980
>Glyma07g01980.1   sequence type=CDS   gene model=Glyma07g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATGAGCAGAGAATACAAGAGGAGGCAAAGGTGGCGGCGTTGGAGTGCAGCGGCACAATGAGTGGACCCCTCGTCGGAGCTGCCGCCTCCGCCGGGACTCGCCGACGCCGGAGGGCGGAGGCTATGCAATTGGTTCTGAGGGCGTTATGCATGGCTTCCTCTGTTGTTGCGATCTCACTCATGGTCACTGCCAAGGAATCCAGCTCTGTCTCCATTTATGGCTTTCTCTTACCTCTTCACTCCAAGTGGTCTTTCTCTGAGTCATACGAATATCTTGTTGGGGTTTCTGCTGCTGTGGCAGCTCATTCGTTGCTTCAACTACTCATCGGCATATCGAGATTTCTTAGGATGTCTTCTATGATTCCTTCCAGAAATCATGCATGGCTTATTTTTGCTGGGGATCAGGCATTTGCTTATGCATTGATGAGTGCTGGATCTGCTGCATCTGGGGTGACCAATCTGAATCGCACAGGAATTAGACACACAGCTCTGCCTGATTTTTGCAAGCCTTTGCACAATTTTTGTGACCATGTTGCCATCTCAATAGCCTTCACTTTCACTAGCTGTTTTTTGCTGGCTACATCTGCTGTTCAGGATGTAATATGGCTCTCCCAGCACTGA
Predicted protein sequences of Glyma07g01980
>Glyma07g01980.1   sequence type=predicted peptide   gene model=Glyma07g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNEQRIQEEAKVAALECSGTMSGPLVGAAASAGTRRRRRAEAMQLVLRALCMASSVVAISLMVTAKESSSVSIYGFLLPLHSKWSFSESYEYLVGVSAAVAAHSLLQLLIGISRFLRMSSMIPSRNHAWLIFAGDQAFAYALMSAGSAASGVTNLNRTGIRHTALPDFCKPLHNFCDHVAISIAFTFTSCFLLATSAVQDVIWLSQH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo