Report for Sequence Feature Glyma07g01971
Feature Type: gene_model
Chromosome: Gm07
Start: 1372043
stop: 1374667
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g01971
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_UPI0002337F00 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337F00 related cluster n=1 Tax=unknown RepID=UPI0002337F00
SoyBase E_val: 3.00E-68 ISS
Expression Patterns of Glyma07g01971
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g01971
Paralog Evidence Comments
Glyma08g21640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g01971 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g016900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g01971
Coding sequences of Glyma07g01971
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g01971.1 sequence type=CDS gene model=Glyma07g01971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAACACTTCTTGTCCCATTGAACTGGAGCCTAGGACACTGAATCAAGTGCAGCTCACTCAAGCAAGGGAAGTAGCTGCAAAGGTAGTTCAAAAGTTGGAACCGTGTGAAGCATCAGCACTGTTTATTGAGGGGCTGATGCATCCAATACAGGAGGTGATGCATATGGATGAAAATGGAAGCCTAGCTGAGAAGCTTGTTGATTGCATGAAGAAGGCTGAGTCCATCCCTGATGACAAAGCTTGCCATTGCCAATGCTCGTGCGCTGCTGAAAACCCATTTAAAGAACCACTTTCTGCACCGTTTTGA
Predicted protein sequences of Glyma07g01971
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g01971.1 sequence type=predicted peptide gene model=Glyma07g01971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANTSCPIELEPRTLNQVQLTQAREVAAKVVQKLEPCEASALFIEGLMHPIQEVMHMDENGSLAEKLVDCMKKAESIPDDKACHCQCSCAAENPFKEPLSAPF*