SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52150 | AT | Annotation by Michelle Graham. TAIR10: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19409913-19413961 REVERSE LENGTH=836 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048263 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of dorsal identity | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0080060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: integument development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR24326 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24326:SF218 | Panther | JGI | ISS | ||
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| PF01852 | PFAM | START domain | JGI | ISS | |
| PF08670 | PFAM | MEKHLA domain | JGI | ISS | |
| UniRef100_G7LFY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper protein ATHB-15 n=2 Tax=Medicago truncatula RepID=G7LFY5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KGJ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGJ9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma07g01940 not represented in the dataset |
Glyma07g01940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g21610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g016500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g01940.1 sequence type=CDS gene model=Glyma07g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTGCAAGGATGGTAGCAGAAACGGAATCGGAATGGATAACGGGAAGTATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTAGAAAGGCTCTATCACGATTGCCCCAAACCTAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCCATTCTCTCCAACATCGAACCCAAGCAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTGCAAGCTGTCAATAGGAAGCTGACTGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGTCAGCAGCACAATTTGATAACTCAACATCCCCCACGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCAGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCTCCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGAAGCCTAGTGATCTGCGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCCGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTCACTGGGTGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTCGGCCCTTGCAGCCTATCAGGATCTCGTGTTGGAAACTATGGAGGTCAAGTTATACTCCCCCTAGCACACACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAATAGCTCATTCTCCTGAAGACACAATAATGCCTAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTCCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACACTTGACCTTGCATCTGCCCTTGACGTTGGTCCCAGTGGAAACCGAGCTTCAAATGGATGTGCTAATTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGCCAATATGTTCGGAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAACAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAGACCACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCACAGATTATCCAACAGGGTTTTGCATGTCTTCAAGGTGGCATTTGTCTTTCAAGCATGGGGCGACCTGTCTCATATGAAAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA
>Glyma07g01940.1 sequence type=predicted peptide gene model=Glyma07g01940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCKDGSRNGIGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQITTQATKDTNCESVVTSGQQHNLITQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDQPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRASNGCANSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSFV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
