Glyma07g01870 - SoyBase

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Report for Sequence Feature Glyma07g01870

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1276571
stop:	1280216
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79760	AT	Annotation by Michelle Graham. TAIR10: downstream target of AGL15-4 \| chr1:30012054-30013042 FORWARD LENGTH=299	SoyBase	E_val: 6.00E-51	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
UniRef100_G7LGM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7LGM7_MEDTR	SoyBase	E_val: 2.00E-164	ISS
UniRef100_I1KGJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g01870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01870

Paralog	Evidence	Comments
Glyma08g21550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g015900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g01870

Limit To All Plant Sequences

>Glyma07g01870.1   sequence type=CDS   gene model=Glyma07g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCGCCATTAACGCCAATGCCGGAAATCACCGTCGATTTCCGCGCTCCGCCGCCCTCTCCGGTGGCCTCTGGCCGGAGATCCACCGTCACCAACGACGACGTTTTGACGGAGTTTTTAGAGGCCTCGCTCCGCGTCCCCGATCTCGTCTTGCCTGACAAGATCTTCCCCAAACAGAAGCAGCTCGAAGCGCCTCCCGAGGTTGACTTCGTCTCCCTCTGCTTCCACTGCGACGACGCTCTTCGTGACGTCGTTTCCGACTCGCTCGCCAGACTCGGATGCTTCCAGCTGCTCAACCACGGGATTCCACTACAGCTCATGGCCGCAGTCGCTGAGGCCGCCGGTGGAATCTTTGAAGTGCCGCCGACGAATAGAGCGTCGGCCACAAGGTCGCCAGAGAAGCCCTGGGGATTCGAGGAGTATCACGCGGGAGAGGAAGTTGGAGATGGGAGTGAAGAATTCGTGTGGTGCAATGACAACGAGTTAAACTCAAAAATGGAGGGAATTTGGCCAATTGGATATCCAAATTTCAGTGAGAAGATAGAAAAGCTTAAATCACGCATAGAGATGGTGGGTAGGAAAATGTTGCCTGTGATATTGGAAAAGGGGAGAATAGAATTTGTGGGTGGGCATGATGAGGTTGGGACACTTTGCTGCGTTTACAAGCATCGACGAGATAATAGCGTTAGCAGCTCCCTGAAATATGACGTGATTAGAATGCTGATTAGGGGAACTGATTACTCACATTCATTGTGCTTCCATGTTTGTAATGGATCTTCACACTTTCACCTTTACTCCAAGAAAACTTGGCTCTCTTTCTGCCCTCAGCCAGCTGCCCTTATTGTCACCGCTGGAGATCAAACCCAGATATTGAGTGGTGGACTGTACAAGCACGTGATTGGAAGGCCAATCTTTAAAGGAGAGAAAGAAGAGAGCATTTCAATGGCTTTCCTCTATTCTACTCAAACAACGAAGAACAATTTTCAAACCAGTAGGGGAAGAACTATTTCACTTTGCCAGCAAGCCATCTTGGCTTTAATTCTTCCCCTTGTGTACCATGTCATGATTTTTTTCTACAATAAACTTAATTAA

Predicted protein sequences of Glyma07g01870

Limit To All Plant Sequences

>Glyma07g01870.1   sequence type=predicted peptide   gene model=Glyma07g01870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSPLTPMPEITVDFRAPPPSPVASGRRSTVTNDDVLTEFLEASLRVPDLVLPDKIFPKQKQLEAPPEVDFVSLCFHCDDALRDVVSDSLARLGCFQLLNHGIPLQLMAAVAEAAGGIFEVPPTNRASATRSPEKPWGFEEYHAGEEVGDGSEEFVWCNDNELNSKMEGIWPIGYPNFSEKIEKLKSRIEMVGRKMLPVILEKGRIEFVGGHDEVGTLCCVYKHRRDNSVSSSLKYDVIRMLIRGTDYSHSLCFHVCNGSSHFHLYSKKTWLSFCPQPAALIVTAGDQTQILSGGLYKHVIGRPIFKGEKEESISMAFLYSTQTTKNNFQTSRGRTISLCQQAILALILPLVYHVMIFFYNKLN*

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