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Report for Sequence Feature Glyma07g01860

Feature Type:gene_model
Chromosome:Gm07
Start:1256178
stop:1265554
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g01860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G59870AT Annotation by Michelle Graham. TAIR10: ABC-2 and Plant PDR ABC-type transporter family protein | chr1:22034661-22039844 FORWARD LENGTH=1469 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015691GO-bp Annotation by Michelle Graham. GO Biological Process: cadmium ion transport SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042344GO-bp Annotation by Michelle Graham. GO Biological Process: indole glucosinolate catabolic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0052544GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0071366GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to indolebutyric acid stimulus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0015086GO-mf Annotation by Michelle Graham. GO Molecular Function: cadmium ion transmembrane transporter activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
KOG0065 KOG Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily JGI ISS
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI ISS
PTHR19241:SF10Panther ATP-BINDING CASSETTE TRANSPORTER-RELATED JGI ISS
PF00005PFAM ABC transporter JGI ISS
PF01061PFAM ABC-2 type transporter JGI ISS
PF08370PFAM Plant PDR ABC transporter associated JGI ISS
UniRef100_G7LGN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter family pleiotropic drug resistance protein n=2 Tax=Medicago truncatula RepID=G7LGN0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KGJ0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGJ0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g01860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g01860 not represented in the dataset
Glyma07g01860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01860
ParalogEvidenceComments
Glyma08g21540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g015800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g01860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g01860
>Glyma07g01860.1   sequence type=CDS   gene model=Glyma07g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGAATAATATCAGCAGAAGCATAAGCAGGAGCATAAGCAGATCAAGTTGGAAAATGGAGGAAGTGTTTGCGAGTGGAAGGTATTCTCGCAGGACTTCACATGTTGAAGAGGATGAGGAAGCTCTCAAATGGGCTGCCATAGAGAAACTTCCCACTTATGATAGGCTAAGGACAAGTATAATCCAAACCTTTGCCGAGGGTGATCAAACCGGGGTGCACAAGGAAATTGATGTTCGGAAGCTAGATGTGAATGATAGGCAACAAATCATTGACAAAATTTTCAGGGTTGCTGAAGAAGATAATGAAAAGTTCCTCAAAAAGTTCAGAAACAGAATTGACAAGGTTGGAATCCGACTTCCAACAGTAGAAGTGAGGTTCCAAAATTTGACTGTTGAAGCAGATTCCTATGTCGGCAGCAGAGCTCTACCAACCCTACCAAATGTTGCATTAAACCTTCTTGAATCAGCTCTTGGCATTTTTGGCATTAGTACAGCTAAGAGAACAAAGCTCACAATTCTTAAGAATGCCTCTGGCATTGTTAAACCAGCAAGGATGGCCCTTCTACTAGGTCCCCCATCTTCAGGGAAAACGACCCTTTTGTTAGCATTGGCCGGAAAATTGGACCCCGAATTGAGGGTAAAAGGAGAAATCACATACAATGGGCATAAACTTAATGAGTTTGTGCCAAGAAAGACTTCAGCATACATTAGCCAAAATGATGTTCATGTTGGAGAAATGACTGTAAAAGAAACACTGGATTTCTCAGCTAGATGCCAGGGAGTTGGGACTCGATATGACCTATTAACCGAGCTTGCTAGAAGGGAAAAGGAAGCCGGCATATTCCCAGAGGCAGATGTTGACCTTTTCATGAAGGCAACTGCAATGGAAGGGACAGAAAGCAGTCTCATTACCGACTACACGCTAAAAATATTGGGGCTTGATATTTGTAAGGATACCATAGTGGGTGATGAAATGCACAGAGGGGTATCCGGTGGCCAAAAGAAGCGTGTCACTACAGGAGAGATGATTGTTGGGCCCACAAAAACACTATTCATGGATGAAATATCAACGGGTCTTGATAGTTCCACAACATATCAGATTGTGAAGTGCTTGCAGCAGATTGTGCACCTTAATGAAGGAACTATCTTAATGTCCCTTCTCCAACCTGCTCCTGAGACTTTCAATCTCTTTGATGACATCATCCTCATATCAGAGGGCCAGATTGTGTACCAAGGCCCACGTGACCACATTGTGGAATTCTTTGAATCCTGTGGGTTCCGCTGTCCCGAAAGAAAGGGAACCGCTGATTTCTTGCAAGAGGTTACCTCAAGGAAGGATCAGGAGCAATACTGGGCAGACAAAAACATGCCATACCGTTATGTTACAGTGACAGAATTTGCAAACAAGTTCAAGAGATTCCATGTTGGAATAAGGCTTGAGAGCGAGTTGTCTGTGCCATTTGACAAGTCAAGTGCACACAAAGCAGCTCTTGTATACAGTAAAAACTCTGTGCCAACAATGGACCTTTTTAAAGCATGTTGGGACAAGGAGTGGCTGCTGATCAAGAGGAACTCCTTCGTCTACATATTCAAGACAGCTCAAATAATCTTCATTGCCTTCATAGCCGCGACGCTGTTCTTGAGGACTGAAATGCACCGGAATAACGAAGATGATGCTGCACTTTACATTGGTGCAATTTTGTTCACTATGATCATGAACATGTTTAATGGTTTTGCTGAGCTAGCACTCACAATTGGAAGGCTTCCCGTGTTTTACAAGCACAGAGACCACCTTTTCCACCCTGCTTGGACTTACACCCTCCCCAATTTCTTGTTGCGTATTCCCATTTCTGTGTTTGAGTCTCTTGTTTGGGTTGGTGTCACCTACTACATCATAGGATTTGCTCCTGATGCCAGCAGGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTAATTTCTGGAGTGTGCAGGACAATGATTATAGCTAACACTGGTGGAGCCCTCATGCTCCTTCTTGTTTTTCTACTTGGAGGCTTCATCCTTCCAAAACGTGAAATTCCTGATTGGTGGGTGTGGGCTTATTGGGTGTCACCATTGACATACGGCTTCAATGCCTTGGCTGTGAATGAAATGTTAGCTCCAAGGTGGATGCATCCACAGACTTCTTCTGATAAAACTACCACACTGGGTCTATCAATACTAAGGAACTTTGATGTTTATGCTAAAAAAGACTGGTACTGGATTGGAGCTGCTGCTCTTCTTGGTTTCACAGTTCTGTACAATGTTCTCTTCACCCTTGCGCTTATGTACCTTAACCCTCTTGGAAAGAAACAAGCAATTATTTCTGAGGAAGATGCGAGTGAAATGGAGGCTGGAGGAGATGCCAACGAAGAACCCAGACTAGTAAGGCCCCCATCCAACAGAGAATCAATGCTTCGATCATTATCTACTGCTGATGGAAATAATTCAAGAGAAGTAGCAATGCAGCGAATGGGTAGCCAAGCTACCAGTGGATTAAGAAAAGTTGACTCGGCAAATGATTCAGCTACTGGAGTTACCCCCAAAAAAGGAATGATTCTACCTTTCCAACCACTTGCAATGTCTTTTGACACTGTTAATTACTACGTCGACATGCCTGCAGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGTTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTAGTGGAGCTGGGAAGACAACTTTAATGGATGTTTTAGCAGGAAGAAAGACTGGTGGCTACATTGAAGGAGATATTAGAATCTCTGGGTTCCCCAAGAACCAAGAAACCTTTGCAAGAGTCTCTGGTTACTGTGAACAAACTGATATTCATTCACCCCAAGTTACTATTAGAGAATCTTTGCTTTACTCTGCCTACCTCCGGTTACCAAAAGAAGTTAGCAAGGATGAAAAAATACAATTTGTGGACCAAGTGATGGATTTGGTAGAGTTAGATAATCTCAAGGATGCTATAGTGGGGCTTCCAGGAGTTACAGGGTTGTCAACCGAACAAAGAAAGAGGCTGACCATCGCTGTTGAGCTTGTTGCTAATCCTTCAATCATTTTCATGGATGAACCCACTTCAGGTCTTGATGCAAGAGCAGCAGCTATTGTTATGAGGACTGTGAGAAACACTGTGGACACAGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGCTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAGGCAATTCCAGGGGTTCCAAAAATTAAAGAGATGTACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTACTGATTTGTATTTCCCCACTAAGTATTCTCAATCCACATTGGGGCAATTTAAATCCTGTTTTTGGAAGCAATGGCTGACATACTGGAGGAGTCCAGATTATAATCTTGTCAGATATTTTTTCACATTGGCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGTTATTTTTGTTGGAATTAACAATTGCCAAACTGTTCAACCAATTGTAGCCGTTGAAAGAACAGTGTTCTATCGAGAAAGAGCTGCCGGAATGTATGCTCCTTTGCCTTATGCCTTAGCACAGGTCTTTTGTGAAGTACCATATGTGTTTTTCCAAACTGTTTATTACTCACTCATAGTGTATGCTATGGTGAGCTTTGAATGGAAAGTGGAGAAGTTCTTTTGGTTCTTCTTTGTCAGCTTCTTCTCTTTCTTGTACTTCACATATTATGGAATGATGACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGGACAGTGTATGGATTAATTGTCTCTCAATATAGAGATATAGAGGACCATCTTTTTGTGCCTGGGAGTACTACTCAAAATTTCACTGTCAAAGGATATATTGAAGACCACTACGGGTTTAAATCCGACTTCATGGGTCCAGTTGCTGCAGTTTTGGTAGCTTTCACTGTCTTCTTTGCCTTTGTATTTTCCTTCTGCATCAGGGCACTGAACTTCCAAACAAGATAA
Predicted protein sequences of Glyma07g01860
>Glyma07g01860.1   sequence type=predicted peptide   gene model=Glyma07g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGNNISRSISRSISRSSWKMEEVFASGRYSRRTSHVEEDEEALKWAAIEKLPTYDRLRTSIIQTFAEGDQTGVHKEIDVRKLDVNDRQQIIDKIFRVAEEDNEKFLKKFRNRIDKVGIRLPTVEVRFQNLTVEADSYVGSRALPTLPNVALNLLESALGIFGISTAKRTKLTILKNASGIVKPARMALLLGPPSSGKTTLLLALAGKLDPELRVKGEITYNGHKLNEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCQGVGTRYDLLTELARREKEAGIFPEADVDLFMKATAMEGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLNEGTILMSLLQPAPETFNLFDDIILISEGQIVYQGPRDHIVEFFESCGFRCPERKGTADFLQEVTSRKDQEQYWADKNMPYRYVTVTEFANKFKRFHVGIRLESELSVPFDKSSAHKAALVYSKNSVPTMDLFKACWDKEWLLIKRNSFVYIFKTAQIIFIAFIAATLFLRTEMHRNNEDDAALYIGAILFTMIMNMFNGFAELALTIGRLPVFYKHRDHLFHPAWTYTLPNFLLRIPISVFESLVWVGVTYYIIGFAPDASRFFKQLLLVFLIQQMAAGMFRVISGVCRTMIIANTGGALMLLLVFLLGGFILPKREIPDWWVWAYWVSPLTYGFNALAVNEMLAPRWMHPQTSSDKTTTLGLSILRNFDVYAKKDWYWIGAAALLGFTVLYNVLFTLALMYLNPLGKKQAIISEEDASEMEAGGDANEEPRLVRPPSNRESMLRSLSTADGNNSREVAMQRMGSQATSGLRKVDSANDSATGVTPKKGMILPFQPLAMSFDTVNYYVDMPAEMRDQGVTEDRLQLLRGVTSSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKNQETFARVSGYCEQTDIHSPQVTIRESLLYSAYLRLPKEVSKDEKIQFVDQVMDLVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIVEYFEAIPGVPKIKEMYNPATWMLEVSSVAAEVRLGMDFAEYYKTSSLFQRNKALVKELSTPPPGATDLYFPTKYSQSTLGQFKSCFWKQWLTYWRSPDYNLVRYFFTLACALMIGTVFWRIGKNRESSADLTMIIGAMYAAVIFVGINNCQTVQPIVAVERTVFYRERAAGMYAPLPYALAQVFCEVPYVFFQTVYYSLIVYAMVSFEWKVEKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDIEDHLFVPGSTTQNFTVKGYIEDHYGFKSDFMGPVAAVLVAFTVFFAFVFSFCIRALNFQTR*






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