Glyma07g01800 - SoyBase

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Report for Sequence Feature Glyma07g01800

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1193771
stop:	1197501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16500	AT	Annotation by Michelle Graham. TAIR10: phytochrome-associated protein 1 \| chr3:5612801-5614208 REVERSE LENGTH=269	SoyBase	E_val: 2.00E-62	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_G7LGP3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive protein IAA18 n=1 Tax=Medicago truncatula RepID=G7LGP3_MEDTR	SoyBase	E_val: 1.00E-96	ISS
UniRef100_I1KGI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KGI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g01800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01800

Paralog	Evidence	Comments
Glyma08g21461	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g015200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g01800

Limit To All Plant Sequences

>Glyma07g01800.1   sequence type=CDS   gene model=Glyma07g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCAAAGAAGCCACAAGTCATCAGAGGAGAGGAAGCTGGAGCTTAGGCTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAAGCATCAGAAAATGCAACAGAGAAAGACGTAGAAATGAATCACCACTCACTCTTGGTTGCTTCTCAACTCAGAAAATTTTTACTTCTGACACGCCAGGTCCAGGTGGAGCTATGTTGCCCTCTGCATGGCCTTCCACATCCTATCATCACCAAGACCAGGCTAAAGCTAAAGCTTCATCATTTCTACAGCTCCAATCAAGTCCGCAAAACATGATACTGATGGGAAAGGATGTGTCACAATTCTCTTGTGTAGAGAAGAAGTCATTCTCACCCTCTTGTGCAAATCCAGCGGTGTCCAAAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCACTTCTAATTCTAAGTTGCCTTCTGGGTCCCAGCAGCAACATCAAAATGTTGTTCCAGGCAAGGTTGCTAGCCAAAAACCTACAGACAACTCAGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTCGCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAATACGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACCCTTGGTAGTAAGCAAGACTAG

Predicted protein sequences of Glyma07g01800

Limit To All Plant Sequences

>Glyma07g01800.1   sequence type=predicted peptide   gene model=Glyma07g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWQRSHKSSEERKLELRLGPPGEESLNESIRKCNRERRRNESPLTLGCFSTQKIFTSDTPGPGGAMLPSAWPSTSYHHQDQAKAKASSFLQLQSSPQNMILMGKDVSQFSCVEKKSFSPSCANPAVSKRTASGPVVGWPPIRSFRKNIASGSTSNSKLPSGSQQQHQNVVPGKVASQKPTDNSGKGLFVKINMDGVAIGRKVDINAYDSYEKLSSAVDELFRGLLAEMKLSHIASSQCCSGQRDSCAGGIQNKEQEEKSNTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLGSKQD*

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