SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32850 | AT | Annotation by Michelle Graham. TAIR10: nuclear poly(a) polymerase | chr4:15850134-15854351 FORWARD LENGTH=745 | SoyBase | E_val: 0 | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0031123 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA 3'-end processing | SoyBase | N/A | ISS |
| GO:0043631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA polyadenylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004652 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polynucleotide adenylyltransferase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| KOG2245 | KOG | Poly(A) polymerase and related nucleotidyltransferases | JGI | ISS | |
| PTHR10682 | Panther | POLY(A) POLYMERASE | JGI | ISS | |
| PTHR10682:SF5 | Panther | POLY(A) POLYMERASE-RELATED | JGI | ISS | |
| PF01909 | PFAM | Nucleotidyltransferase domain | JGI | ISS | |
| PF04926 | PFAM | Poly(A) polymerase predicted RNA binding domain | JGI | ISS | |
| PF04928 | PFAM | Poly(A) polymerase central domain | JGI | ISS | |
| UniRef100_G7LGP7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Poly(A) polymerase n=1 Tax=Medicago truncatula RepID=G7LGP7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337CE9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337CE9 related cluster n=1 Tax=unknown RepID=UPI0002337CE9 | SoyBase | E_val: 0 | ISS |
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Glyma07g01780 not represented in the dataset |
Glyma07g01780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g21440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g015000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g01780.3 sequence type=transcript gene model=Glyma07g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGCTAACCCCACCATTCCCTTCACCGCGCTTTCTCTTTCTCTCTTTTTTCTGTTCTACAATCTCTTCCCTTCATCCTCCTCTTTCAGATCTCCCTTTATTTTTCTCCCTTTTCGTTTTTCTTCGATTTTGAGATCTAGGGCTTTTTAATTTCCGCAATTACTCGCACCGCTTATCTTTTCTTCGTTCTAGGGTTCCGATTTGCCATTCAATTCGGTTTTCCATTGTGGGTTGTGTCCGGATTCTCGATCGGTTCCCTTTTCTTCTTCTTTTTTTTTTTTACTCTTAAAAGTTTTCTGGGTGTCGTTTTGTTTGAGGTTGTTTTTCTGAGAAAAAAAGTTAAAAAAAATCCTTTTTTTCCGGATATTTGTGCGTTGAGATCATGGGGGGCTCTGAAGGGGTGGGAGCATCGTCGAAGCAATTCGGTGTCACAAAGCCCATATCAATGGCTGGCCCATCGGCTACTGATTTGCAAAGGACTCGTGAGTTAGAGAAGTTTCTCGCTGCTTCGGGGCTTTACGAGAGCAAGGATGAAGCTGCCAAGAGGGAAGAGGTTCTTCACCGGCTTGGAGAGATAGTTAAAAGTTGGGTGAAGCAACTGACCCGCCTTAGGGGATACACTGGTCAAATGGTGGAGGATGCAAATGCTATCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTGGACACTTTATGCATTGGGCCGTCCTATGTAACCCGAGAGGAGGATTTTTTCTACACATTGCATGATATCTTAGCTAACGTGGAGGAAGTCACAGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTCTATGCCAGTATTTCTAGATTGGTTTTACCTGAAGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACCGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATATTGAGCACTTTCGTACAACACTTCGCTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCTAATGTGACTGGTTTTCTAGGTGGTGTTAACTTGGCACTTCTTGTAGCCCGAGTGTGCCAGTTTTATCCGAATGCAGTTCCAAGTATGCTTGTTTCCAGATTCTTCAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCCCGTGACAGATCCCATCATATGCCAATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACGAGCACCCTTCGTGTAATGATGGACCAGTTCCAATATGGCAACAAGATCTGTGGGGAAATAGAATTGAGTAGAGCTTGTTGGAAGGCTCTGTTTGAACAGTACAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGCTGATGACTTGCGCAGTTGGAAAGGTTGGGTGGAATCACGGCTTCGCCAGCTGACTTTGATGATTGAACGTGACACTTTTGGGAAGTTGCAATGTCATCCCTATCATCATGAGTTTGTGGATACTTCAAGGCTGTGTGCACATTGTGCTTTCTTTATGGGTTTGCAGAGGAAACAGGGAGAGGTTGTTCAAGAAGGTCAGCAATTTGATATACGAGGGACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCGGGGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATTCTATGTTGTTCCTGATGGTTATAAACGATCTCGGCTATCAAGGCCAACATCACAAGTTGAGAATTGTAAATCATTTCATAATGAGGTTTCGGGGACTGAACATGTTGAGAGAATCCGTAAGAGGAAGAACAATGACGGTGTGGATGTGAGGGGGGATGCTATAGTTAAAAGGCAATCTGCTAGTCCTTCTGAAGATAGATTGGCAAGACACAGCAGCCTTGGTACTGGTGGTTTGTCTGTTGAAGCTGTATCTGATAGACAAGAGTTGAGAAATGTTGAGTGCAATCATTTGTCAAACAGTGGGCAAGATGAGTTGGATAGAACAGAGTCTCCAGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTGGTTCTTCTGAAGATACTGGATCTGTAACAGTGGCAGGATGTGTTGAGGAAAGCACCGGGGGTGTTGAAATGATGAACAATGGCTGGTTTGAGGATAGCACTTATGGGAATGATTCTGTCACACTGGTGAAAAATATAGTGGCAAGTGGAAATGAAGTGTTTCAACATGAGCTACAGGAGCAGTTTCAGATTGGACAGCCAAGTGCACTGATGTGCAAGGTCTTCCCTGGAGTACTGTAAAGCCAAAATGCAATGATTGTATGGCTTTCGGTGATGCATGATATCTTCACTAAATCTGAGTGATGTATTAGAGATAGCCTTCTAAAGGCTGCTCGTGCACATTTGAAGAATTTTGCACATCTACTGTTATATTGTTTCAATTGTTATAACCTTTTTGTTAGCTTATCTTACAATGTTGTGTACTGACCAATTTACCTTTTTTTTTCCTGGGGCTTTATTCTGAAGCCGAATGCAACGCTAGGGATGGTTCTTGATTCTGCAGAAAAGGTTATTTCAGAAGTTGTGCAAGAGCCGGTGATAAGGAGATTGAGACTATCATCGACAGTGTGAGATATCAGTAGCAATATCTGGAAGTGGCAATCTTTCAGTGGAGAAAGAAGAGAGCCAGCAATTTGGGTAAGTACTAATTTAAATGGCTGGCCTTCATTTCTCTATTTTTTTCAGGCTTGCTTGATCATTCAAGCTTGCAAATTGGGACTGATCCGAATCAAGCTGAAGAGCTGGAGCTGAGATTTGTCAGCCCTTTGTACAGTTTTGCATTTTTTGTGCATTTGACTCGATTAACTTTACTAGAAGCTCTGTTTAGGATTCTTACTAAACTTAGGGGCATATTTTAAAGGCTCTTGCTGTACTTTGCTGTTGTTTTTGCTTTTTTTTTAGGGCTAGGGAGATCCGGGGAGGGTGGGGGTTGGGTAGTGTTTTCTACTTTTCTAGCAGAGGGAGTTTATTTAGCAGCAAGGCTTATATACTGATATTGTTGTACTGCCTGAGAGGTTAGCATATAAACATGACAGTGATATGGCAACTGCTGTCTCAACCTTCTGCTGTACATTTCTTGGTTTCTCGCCTCTGCTCAACATCCAACAATTAGTACTATTATCGTGTAAATTCCATTTCACTAATTAACAAGAAACGAATATACACCAATAAATTATGATTCCATATTATAGAAACATACTAACCCAGTA
>Glyma07g01780.2 sequence type=CDS gene model=Glyma07g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGGCTCTGAAGGGGTGGGAGCATCGTCGAAGCAATTCGGTGTCACAAAGCCCATATCAATGGCTGGCCCATCGGCTACTGATTTGCAAAGGACTCGTGAGTTAGAGAAGTTTCTCGCTGCTTCGGGGCTTTACGAGAGCAAGGATGAAGCTGCCAAGAGGGAAGAGGTTCTTCACCGGCTTGGAGAGATAGTTAAAAGTTGGGTGAAGCAACTGACCCGCCTTAGGGGATACACTGGTCAAATGGTGGAGGATGCAAATGCTATCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTGGACACTTTATGCATTGGGCCGTCCTATGTAACCCGAGAGGAGGATTTTTTCTACACATTGCATGATATCTTAGCTAACGTGGAGGAAGTCACAGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTCTATGCCAGTATTTCTAGATTGGTTTTACCTGAAGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACCGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATATTGAGCACTTTCGTACAACACTTCGCTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCTAATGTGACTGGTTTTCTAGGTGGTGTTAACTTGGCACTTCTTGTAGCCCGAGTGTGCCAGTTTTATCCGAATGCAGTTCCAAGTATGCTTGTTTCCAGATTCTTCAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCCCGTGACAGATCCCATCATATGCCAATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACGAGCACCCTTCGTGTAATGATGGACCAGTTCCAATATGGCAACAAGATCTGTGGGGAAATAGAATTGAGTAGAGCTTGTTGGAAGGCTCTGTTTGAACAGTACAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGCTGATGACTTGCGCAGTTGGAAAGGTTGGGTGGAATCACGGCTTCGCCAGCTGACTTTGATGATTGAACGTGACACTTTTGGGAAGTTGCAATGTCATCCCTATCATCATGAGTTTGTGGATACTTCAAGGCTGTGTGCACATTGTGCTTTCTTTATGGGTTTGCAGAGGAAACAGGGAGAGGTTGTTCAAGAAGGTCAGCAATTTGATATACGAGGGACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCGGGGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATTCTATGTTGTTCCTGATGGTTATAAACGATCTCGGCTATCAAGGCCAACATCACAAGTTGAGAATTGTAAATCATTTCATAATGAGGTTTCGGGGACTGAACATGTTGAGAGAATCCGTAAGAGGAAGAACAATGACGGTGTGGATGTGAGGGGGGATGCTATAGTTAAAAGGCAATCTGCTAGTCCTTCTGAAGATAGATTGGCAAGACACAGCAGCCTTGGTACTGGTGGTTTGTCTGTTGAAGCTGTATCTGATAGACAAGAGTTGAGAAATGTTGAGTGCAATCATTTGTCAAACAGTGGGCAAGATGAGTTGGATAGAACAGAGTCTCCAGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTGGTTCTTCTGAAGATACTGGATCTGTAACAGTGGCAGGATGTGTTGAGGAAAGCACCGGGGGTGTTGAAATGATGAACAATGGCTGGTTTGAGGATAGCACTTATGGGAATGATTCTGTCACACTGGTGAAAAATATAGTGGCAAGTGGAAATGAAGTGTTTCAACATGAGCTACAGGAGCAGTTTCAGCCGAATGCAACGCTAGGGATGGTTCTTGATTCTGCAGAAAAGGTTATTTCAGAAGTTGTGCAAGAGCCGGTGATAAGGAGATTGAGACTATCATCGACAGTGTGA >Glyma07g01780.3 sequence type=CDS gene model=Glyma07g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGGCTCTGAAGGGGTGGGAGCATCGTCGAAGCAATTCGGTGTCACAAAGCCCATATCAATGGCTGGCCCATCGGCTACTGATTTGCAAAGGACTCGTGAGTTAGAGAAGTTTCTCGCTGCTTCGGGGCTTTACGAGAGCAAGGATGAAGCTGCCAAGAGGGAAGAGGTTCTTCACCGGCTTGGAGAGATAGTTAAAAGTTGGGTGAAGCAACTGACCCGCCTTAGGGGATACACTGGTCAAATGGTGGAGGATGCAAATGCTATCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTGGACACTTTATGCATTGGGCCGTCCTATGTAACCCGAGAGGAGGATTTTTTCTACACATTGCATGATATCTTAGCTAACGTGGAGGAAGTCACAGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTCTATGCCAGTATTTCTAGATTGGTTTTACCTGAAGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACCGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATATTGAGCACTTTCGTACAACACTTCGCTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCTAATGTGACTGGTTTTCTAGGTGGTGTTAACTTGGCACTTCTTGTAGCCCGAGTGTGCCAGTTTTATCCGAATGCAGTTCCAAGTATGCTTGTTTCCAGATTCTTCAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCCCGTGACAGATCCCATCATATGCCAATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACGAGCACCCTTCGTGTAATGATGGACCAGTTCCAATATGGCAACAAGATCTGTGGGGAAATAGAATTGAGTAGAGCTTGTTGGAAGGCTCTGTTTGAACAGTACAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGCTGATGACTTGCGCAGTTGGAAAGGTTGGGTGGAATCACGGCTTCGCCAGCTGACTTTGATGATTGAACGTGACACTTTTGGGAAGTTGCAATGTCATCCCTATCATCATGAGTTTGTGGATACTTCAAGGCTGTGTGCACATTGTGCTTTCTTTATGGGTTTGCAGAGGAAACAGGGAGAGGTTGTTCAAGAAGGTCAGCAATTTGATATACGAGGGACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCGGGGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATTCTATGTTGTTCCTGATGGTTATAAACGATCTCGGCTATCAAGGCCAACATCACAAGTTGAGAATTGTAAATCATTTCATAATGAGGTTTCGGGGACTGAACATGTTGAGAGAATCCGTAAGAGGAAGAACAATGACGGTGTGGATGTGAGGGGGGATGCTATAGTTAAAAGGCAATCTGCTAGTCCTTCTGAAGATAGATTGGCAAGACACAGCAGCCTTGGTACTGGTGGTTTGTCTGTTGAAGCTGTATCTGATAGACAAGAGTTGAGAAATGTTGAGTGCAATCATTTGTCAAACAGTGGGCAAGATGAGTTGGATAGAACAGAGTCTCCAGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTGGTTCTTCTGAAGATACTGGATCTGTAACAGTGGCAGGATGTGTTGAGGAAAGCACCGGGGGTGTTGAAATGATGAACAATGGCTGGTTTGAGGATAGCACTTATGGGAATGATTCTGTCACACTGGTGAAAAATATAGTGGCAAGTGGAAATGAAGTGTTTCAACATGAGCTACAGGAGCAGTTTCAGATTGGACAGCCAAGTGCACTGATGTGCAAGGTCTTCCCTGGAGTACTGTAA
>Glyma07g01780.2 sequence type=predicted peptide gene model=Glyma07g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGSEGVGASSKQFGVTKPISMAGPSATDLQRTRELEKFLAASGLYESKDEAAKREEVLHRLGEIVKSWVKQLTRLRGYTGQMVEDANAIILTFGSYRLGVHGPGADLDTLCIGPSYVTREEDFFYTLHDILANVEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLVLPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQFYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFPVWHPGKNPRDRSHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNKICGEIELSRACWKALFEQYSFFESYKNYLQVDVVAADADDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHHEFVDTSRLCAHCAFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMEIYVSHVRRRQIPFYVVPDGYKRSRLSRPTSQVENCKSFHNEVSGTEHVERIRKRKNNDGVDVRGDAIVKRQSASPSEDRLARHSSLGTGGLSVEAVSDRQELRNVECNHLSNSGQDELDRTESPEAASNSSVITSVGSSEDTGSVTVAGCVEESTGGVEMMNNGWFEDSTYGNDSVTLVKNIVASGNEVFQHELQEQFQPNATLGMVLDSAEKVISEVVQEPVIRRLRLSSTV* >Glyma07g01780.3 sequence type=predicted peptide gene model=Glyma07g01780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGSEGVGASSKQFGVTKPISMAGPSATDLQRTRELEKFLAASGLYESKDEAAKREEVLHRLGEIVKSWVKQLTRLRGYTGQMVEDANAIILTFGSYRLGVHGPGADLDTLCIGPSYVTREEDFFYTLHDILANVEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLVLPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQFYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFPVWHPGKNPRDRSHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNKICGEIELSRACWKALFEQYSFFESYKNYLQVDVVAADADDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHHEFVDTSRLCAHCAFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMEIYVSHVRRRQIPFYVVPDGYKRSRLSRPTSQVENCKSFHNEVSGTEHVERIRKRKNNDGVDVRGDAIVKRQSASPSEDRLARHSSLGTGGLSVEAVSDRQELRNVECNHLSNSGQDELDRTESPEAASNSSVITSVGSSEDTGSVTVAGCVEESTGGVEMMNNGWFEDSTYGNDSVTLVKNIVASGNEVFQHELQEQFQIGQPSALMCKVFPGVL*
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