Glyma07g01680 - SoyBase

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Report for Sequence Feature Glyma07g01680

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1104053
stop:	1106450
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16370	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr3:5556928-5558351 FORWARD LENGTH=353	SoyBase	E_val: 0	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7LHE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase APG n=2 Tax=Medicago truncatula RepID=G7LHE2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KGH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g01680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g01680 not represented in the dataset	Glyma07g01680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01680

Paralog	Evidence	Comments
Glyma08g21340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g014100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g01680

Limit To All Plant Sequences

>Glyma07g01680.2   sequence type=transcript   gene model=Glyma07g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCATCCTCCTCCTTCAATAGGAGTCATTTTCGGTTGCCATATAAGTTCTCACTTTCTGCTACACTCAATGCACCCAAAGGTGCAAAAATATTAAGATGATAAACATTGGAGCACTTGTTGTACTCTTTGCATTTCTCTTCCTCAGTTGTGCCTATGCACAAGACACAACAACCCTTGTGCCTGCAATCATAACTTTTGGTGACTCAGCCGTGGATGTAGGGAATAATGACTATCTTCCCACCCTTTTCAAGGCTGATTACCCTCCTTATGGGAGGGACTTTGCTAACCACCAACCTACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATTTTACTGCTGACACTTTGGGTTTTAAGACCTATGCTCCAGCATATCTTAGCCCACAGGCATCAGGGAAAAACCTCCTTATTGGAGCAAACTTTGCTTCTGCTGCATCTGGTTATGATGAAAATGCTGCTACTTTGAATCATGCGATTCCGTTGTCCCAACAGTTAAGTTATTTCAAGGAATACCAAGGCAAGCTGGCCAAGGTAGCTGGCAGCAAAAAAGCAGCCTCAATTATCAAGGATGCACTGTATGTGCTCAGTGCTGGAAGCAGTGACTTTGTGCAAAATTATTATGTCAATCCTTGGATCAACAAAGTATACTCTCCTGATCAGTATTCATCCTACTTAGTTGGTGAATTCTCAAGTTTTGTTAAGGACTTGTATGGATTGGGAGCCAGGAGACTTGGAGTGACTTCACTCCCACCATTGGGTTGCCTACCTGCTGCAAGGACTATATTTGGTTTCCATGAGAATGGTTGTGTCTCAAGAATCAACACTGATGCTCAAGGATTTAACAAGAAGCTCAACTCAGCTGCAGCAAGTCTTCAAAAGCAACTTCCTGGTCTTAAGATTGCAATTTTCGACATTTACAAGCCTCTCTATGACCTTGTTCAATCCCCTTCAAAATCTGGTAGACAATACTTTGACTTAAATTAATTAATTATTCAACATAGGTCCTGTTTGGATAAGTTTCTTCATGAGTACTTATAAGAGAAGAAAATAAGAACAAAAAAAATAAATAAGCTATGCTTAAGTTAAAATTAATTTTTTTATAGAAGATAAAATCATTTAGCTTCTCCAAATAATTGATTCTAACCTG

Coding sequences of Glyma07g01680

Limit To All Plant Sequences

>Glyma07g01680.1   sequence type=CDS   gene model=Glyma07g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAACATTGGAGCACTTGTTGTACTCTTTGCATTTCTCTTCCTCAGTTGTGCCTATGCACAAGACACAACAACCCTTGTGCCTGCAATCATAACTTTTGGTGACTCAGCCGTGGATGTAGGGAATAATGACTATCTTCCCACCCTTTTCAAGGCTGATTACCCTCCTTATGGGAGGGACTTTGCTAACCACCAACCTACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATTTTACTGCTGACACTTTGGGTTTTAAGACCTATGCTCCAGCATATCTTAGCCCACAGGCATCAGGGAAAAACCTCCTTATTGGAGCAAACTTTGCTTCTGCTGCATCTGGTTATGATGAAAATGCTGCTACTTTGAATCATGCGATTCCGTTGTCCCAACAGTTAAGTTATTTCAAGGAATACCAAGGCAAGCTGGCCAAGGTAGCTGGCAGCAAAAAAGCAGCCTCAATTATCAAGGATGCACTGTATGTGCTCAGTGCTGGAAGCAGTGACTTTGTGCAAAATTATTATGTCAATCCTTGGATCAACAAAGTATACTCTCCTGATCAGTATTCATCCTACTTAGTTGGTGAATTCTCAAGTTTTGTTAAGGACTTGTATGGATTGGGAGCCAGGAGACTTGGAGTGACTTCACTCCCACCATTGGGTTGCCTACCTGCTGCAAGGACTATATTTGGTTTCCATGAGAATGGTTGTGTCTCAAGAATCAACACTGATGCTCAAGGATTTAACAAGAAGCTCAACTCAGCTGCAGCAAGTCTTCAAAAGCAACTTCCTGGTCTTAAGATTGCAATTTTCGACATTTACAAGCCTCTCTATGACCTTGTTCAATCCCCTTCAAAATCTGGTTTTGTGGAGGCAAACAGAGGTTGCTGTGGTACCGGGACTGTAGAGACAACATCCTTGTTGTGTAATTCAAAATCTCCAGGAACTTGTTCTAATGCCACACAGTATGTGTTTTGGGACAGTGTCCATCCTTCACAGGCTGCTAACCAAGTTCTAGCTGATGCATTAATTCTACAAGGCATATCTCTTGTCACATAA

>Glyma07g01680.2   sequence type=CDS   gene model=Glyma07g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAACATTGGAGCACTTGTTGTACTCTTTGCATTTCTCTTCCTCAGTTGTGCCTATGCACAAGACACAACAACCCTTGTGCCTGCAATCATAACTTTTGGTGACTCAGCCGTGGATGTAGGGAATAATGACTATCTTCCCACCCTTTTCAAGGCTGATTACCCTCCTTATGGGAGGGACTTTGCTAACCACCAACCTACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATTTTACTGCTGACACTTTGGGTTTTAAGACCTATGCTCCAGCATATCTTAGCCCACAGGCATCAGGGAAAAACCTCCTTATTGGAGCAAACTTTGCTTCTGCTGCATCTGGTTATGATGAAAATGCTGCTACTTTGAATCATGCGATTCCGTTGTCCCAACAGTTAAGTTATTTCAAGGAATACCAAGGCAAGCTGGCCAAGGTAGCTGGCAGCAAAAAAGCAGCCTCAATTATCAAGGATGCACTGTATGTGCTCAGTGCTGGAAGCAGTGACTTTGTGCAAAATTATTATGTCAATCCTTGGATCAACAAAGTATACTCTCCTGATCAGTATTCATCCTACTTAGTTGGTGAATTCTCAAGTTTTGTTAAGGACTTGTATGGATTGGGAGCCAGGAGACTTGGAGTGACTTCACTCCCACCATTGGGTTGCCTACCTGCTGCAAGGACTATATTTGGTTTCCATGAGAATGGTTGTGTCTCAAGAATCAACACTGATGCTCAAGGATTTAACAAGAAGCTCAACTCAGCTGCAGCAAGTCTTCAAAAGCAACTTCCTGGTCTTAAGATTGCAATTTTCGACATTTACAAGCCTCTCTATGACCTTGTTCAATCCCCTTCAAAATCTGGTAGACAATACTTTGACTTAAATTAA

Predicted protein sequences of Glyma07g01680

Limit To All Plant Sequences

>Glyma07g01680.1   sequence type=predicted peptide   gene model=Glyma07g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MINIGALVVLFAFLFLSCAYAQDTTTLVPAIITFGDSAVDVGNNDYLPTLFKADYPPYGRDFANHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQASGKNLLIGANFASAASGYDENAATLNHAIPLSQQLSYFKEYQGKLAKVAGSKKAASIIKDALYVLSAGSSDFVQNYYVNPWINKVYSPDQYSSYLVGEFSSFVKDLYGLGARRLGVTSLPPLGCLPAARTIFGFHENGCVSRINTDAQGFNKKLNSAAASLQKQLPGLKIAIFDIYKPLYDLVQSPSKSGFVEANRGCCGTGTVETTSLLCNSKSPGTCSNATQYVFWDSVHPSQAANQVLADALILQGISLVT*

>Glyma07g01680.2   sequence type=predicted peptide   gene model=Glyma07g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MINIGALVVLFAFLFLSCAYAQDTTTLVPAIITFGDSAVDVGNNDYLPTLFKADYPPYGRDFANHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQASGKNLLIGANFASAASGYDENAATLNHAIPLSQQLSYFKEYQGKLAKVAGSKKAASIIKDALYVLSAGSSDFVQNYYVNPWINKVYSPDQYSSYLVGEFSSFVKDLYGLGARRLGVTSLPPLGCLPAARTIFGFHENGCVSRINTDAQGFNKKLNSAAASLQKQLPGLKIAIFDIYKPLYDLVQSPSKSGRQYFDLN*

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