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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25930 | AT | Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695 | SoyBase | E_val: 2.00E-47 | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009585 | GO-bp | Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction | SoyBase | N/A | ISS |
| GO:0009649 | GO-bp | Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circumnutation | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein C-terminus binding | SoyBase | N/A | ISS |
| UniRef100_F2Y9H1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elf3b (Fragment) n=2 Tax=Populus tremula RepID=F2Y9H1_POPTN | SoyBase | E_val: 7.00E-69 | ISS |
| UniRef100_UPI0002337CDD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337CDD related cluster n=1 Tax=unknown RepID=UPI0002337CDD | SoyBase | E_val: 0 | ISS |
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Glyma07g01601 not represented in the dataset |
Glyma07g01601 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g21115 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g013500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g01601.2 sequence type=transcript gene model=Glyma07g01601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGAAAATGCAACGTGTGGTAACCATGCACTGACTTACCCTTTGGCCTTGCCTTGCACTTCGCAGTGCATGCAAATGAATTGAAAGAAAGAGAGACTCGGTCACTGCCTCTGTCTCCAATCATCCGCATTCATTGTGCCATGTTACTCTCCGATCCCTCTTATACTCTTTGCCTCCAACTCTTCCTCATCAACTCAACAACATGGTAGGGTCATCATCACTCGCCAACAATGCTATTGCTATTGATGCTATTTCATACTCAAACGGGAACACTACTTTCTCTACAAACATTGGAGATATGAAGTTGTTGCAAGTGGTTAGTGCATAGAATGATGAATAGGATGAGTGGGGGAATTGAAGAGGACAAGGAGATTAGCCCAATGTTTCCAAGGTTGCATGTTAAGGATGCAGAGAGAGGAGGGCCAAAAGCACCCCCAAGGAATAAGATGGCACTCTATGAACAATTCAGCCTCCCTTCTCAAAATTTTGCACCAGGATCAGCATCCTTGTTTCCACTTCCGCTCAGAAACTACACAGGCCCTACATCATCTAGCCACATCAGTAGCAATCAAAGCATCCAATTTTGCACCTCTAGCATGCCTTCTATTCTGGCTGAGAAGAGTCAAACCTATAATTCCAGAAAGACTAACTTAACCAAATTCATGCAAGATGATTTCATTAATAGTAAGAATTCTCTGAGAACACTTGATGGCGAAGATACTTTTATAACTTGTGGTTCTGCACATAGAAAAAACTCATCCTGTAGCATCATCCAAAATTTTAAAGATGAAGACAAACTTTCTCATAGTAATTTGAGCGGTTCGCTTAAAAGTCCAAATTCATTTAGAAAGGTGAATTCACCTGGTGCTGTAGACCTGAAGTCAGCACAATATGGGAAGAACCGGATGGAGGATCATACTGAAGTGAGTCAAAATGGTCAGAAGCCAGAGGAAGTGCTTCCTCACTCATTAGATGGTTTTGGTGACATGACAGATGCATCATTAATCTCATTGGTGAAAGGTAGCAGTGTCCGTACACATGAAGAGCTTGCAGTTTTTGAGGACCAAGTAAACTCAAGGGACCATCACATTGAGAAGCCAACAGCTAATGATGTACACAAATGTGCTGGTGAGTTAGAAATTGGTAGAAGGTGCTTCCTGGACAAGGTAGACATGAATGAAGATGAGGAGACATATAGGCATTCTGATGCTGTAAGTAAAGTTAACTCAGAATGTACATTGGCTATGGATATTTCCCCTGACAATGTTGTAGGAGCTATAGGTGAACAACAATTTTGGAAAGTCAGAAGAACTATCATTAATCAACAGAAAATCTTTGTCAAGCAAGTGTTTGAGTTGCATAGACTGATAAAGGTGCAAAGATTAATAGCAGGCTCACCCCATGTATTGCTTGAAGATAACCTTTTACTTAACAAGCCACCACCAAAAACATCCACAAGCAAGAAGTTTCAATCTGACTTTGCCAGCCAAAAACCATCATCAGTTGTTAAACTTGACAATAAATCTGTGAAGGTCAATACTGCTGAGAAGGCTACAAACAGCGCAGTTGGGAAGATTCCCATTCCTTGTATCAGCAACACAACCAAAGGTCATGCTAATCAGCTGCCAAACTATGGCCATCATTTAGGAAACCCTGCATTAGCCTCTGCAGATTCAAATTCCAAACAGTCGCCAAGCTATGTCTACCCCCCACCTGGGAACCAGTGGCTAGTTCCTGTCATGTCCCCATCTGAAGGCCTAGTATACAAACCAATCATATGGCCATGCCCTCCAAATGCAGGCTTCATGGCACCCATATATGGTTCTTGTGGCACAGTGAGCTTCAATCCTCTAAGCAAGGATGCTTCTTCAGATGCAGCTCTTGCTCCAAGTTCTCACCAAAAGCTTGGAATCCTTTCTGGTTCATCTTTACCCCAGTTCTTACCACCATCATTCATGAATCATCCATCTTCTATATCAGCTTCAGCTGTTGAGCAAATGGGGCAATCTAATGGTCCTGAAAATCACCACTCATGGGGTGAAGTCAATTCTGCCATACTGTTCCAAAGCTCATCTAACATGTCAAGCCCCACAAGTCAAGTGATGCCAAGAAACATTTCAACTTATCATCACTCACTGCAAGATAAAGAACTGCATAGAAGCACAGCTAGCAGTCCCTCCAAGAGGGTAAGTGGAGAAGCGCTTCCTTTGTTTCCTTTGGCACCAACATGTTGGCAATCAGAAGATACAAACACACAGGTTGAACAACAACCACGAGTAATCAAAGCTATGCCTCACAATCCAAAAACAGCAAGTGAAACAGCTGCCAAGATATTCAGGTCAATACAAGAAGAAAGGAAACATTTGTAAACTAGTGATGACATTGTCTGTCTCATGACATGACATGTCTGTTAATTTCAGATATTTCTAGTTTGACAATCAAACATTGTATCTATAACCATTTTTCCCTGATAAATATACCTGCAATGTATTTATTGACAATAATACTAGAGGACTTCTAAGGAAGAAGCACATGCATCGTTAGGCAGAAGCTGAAGCAACACTGTAAATTCATGAGACTAAAGAAAAATATTTGTACCAACCACTTGAAGAAATGCAGAAACCTCAGCAGCTCGCTCAGCCTTGTACAAATAAGTTGCTAGGTTTCATGCAGACTAGTGGTAGCATCACACACTCAAGCTAGGGAACTACAAAATGTAGAATTGTGGACCCTTTTGATTATTTACACACCTGAATTGTTTTTTGTATTTTGATCAATACAAATAAAAAGTCACAATCTATCATGTTGTTATTATATAAACTAGAAAGAGAG
>Glyma07g01601.1 sequence type=CDS gene model=Glyma07g01601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAATAGGATGAGTGGGGGAATTGAAGAGGACAAGGAGATTAGCCCAATGTTTCCAAGGTTGCATGTTAAGGATGCAGAGAGAGGAGGGCCAAAAGCACCCCCAAGGAATAAGATGGCACTCTATGAACAATTCAGCCTCCCTTCTCAAAATTTTGCACCAGGATCAGCATCCTTGTTTCCACTTCCGCTCAGAAACTACACAGGCCCTACATCATCTAGCCACATCAGTAGCAATCAAAGCATCCAATTTTGCACCTCTAGCATGCCTTCTATTCTGGCTGAGAAGAGTCAAACCTATAATTCCAGAAAGACTAACTTAACCAAATTCATGCAAGATGATTTCATTAATAGTAAGAATTCTCTGAGAACACTTGATGGCGAAGATACTTTTATAACTTGTGGTTCTGCACATAGAAAAAACTCATCCTGTAGCATCATCCAAAATTTTAAAGATGAAGACAAACTTTCTCATAGTAATTTGAGCGGTTCGCTTAAAAGTCCAAATTCATTTAGAAAGGTGAATTCACCTGGTGCTGTAGACCTGAAGTCAGCACAATATGGGAAGAACCGGATGGAGGATCATACTGAAGTGAGTCAAAATGGTCAGAAGCCAGAGGAAGTGCTTCCTCACTCATTAGATGGTTTTGGTGACATGACAGATGCATCATTAATCTCATTGGTGAAAGGTAGCAGTGTCCGTACACATGAAGAGCTTGCAGTTTTTGAGGACCAAGTAAACTCAAGGGACCATCACATTGAGAAGCCAACAGCTAATGATGTACACAAATGTGCTGGTGAGTTAGAAATTGGTAGAAGGTGCTTCCTGGACAAGGTAGACATGAATGAAGATGAGGAGACATATAGGCATTCTGATGCTGTAAGTAAAGTTAACTCAGAATGTACATTGGCTATGGATATTTCCCCTGACAATGTTGTAGGAGCTATAGGTGAACAACAATTTTGGAAAGTCAGAAGAACTATCATTAATCAACAGAAAATCTTTGTCAAGCAAGTGTTTGAGTTGCATAGACTGATAAAGGTGCAAAGATTAATAGCAGGCTCACCCCATGTATTGCTTGAAGATAACCTTTTACTTAACAAGCCACCACCAAAAACATCCACAAGCAAGAAGTTTCAATCTGACTTTGCCAGCCAAAAACCATCATCAGTTGTTAAACTTGACAATAAATCTGTGAAGGTCAATACTGCTGAGAAGGCTACAAACAGCGCAGTTGGGAAGATTCCCATTCCTTGTATCAGCAACACAACCAAAGGTCATGCTAATCAGCTGCCAAACTATGGCCATCATTTAGGAAACCCTGCATTAGCCTCTGCAGATTCAAATTCCAAACAGTCGCCAAGCTATGTCTACCCCCCACCTGGGAACCAGTGGCTAGTTCCTGTCATGTCCCCATCTGAAGGCCTAGTATACAAACCAATCATATGGCCATGCCCTCCAAATGCAGGCTTCATGGCACCCATATATGGTTCTTGTGGCACAGTGAGCTTCAATCCTCTAAGCAAGGATGCTTCTTCAGATGCAGCTCTTGCTCCAAGTTCTCACCAAAAGCTTGGAATCCTTTCTGGTTCATCTTTACCCCAGTTCTTACCACCATCATTCATGAATCATCCATCTTCTATATCAGCTTCAGCTGTTGAGCAAATGGGGCAATCTAATGGTCCTGAAAATCACCACTCATGGGGTGAAGTCAATTCTGCCATACTGTTCCAAAGCTCATCTAACATGTCAAGCCCCACAAGTCAAGTGATGCCAAGAAACATTTCAACTTATCATCACTCACTGCAAGATAAAGAACTGCATAGAAGCACAGCTAGCAGTCCCTCCAAGAGGGTAAGTGGAGAAGCGCTTCCTTTGTTTCCTTTGGCACCAACATGTTGGCAATCAGAAGATACAAACACACAGGTTGAACAACAACCACGAGTAATCAAAGCTATGCCTCACAATCCAAAAACAGCAAGTGAAACAGCTGCCAAGATATTCAGGTCAATACAAGAAGAAAGGAAACATTTGTAA >Glyma07g01601.2 sequence type=CDS gene model=Glyma07g01601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAATAGGATGAGTGGGGGAATTGAAGAGGACAAGGAGATTAGCCCAATGTTTCCAAGGTTGCATGTTAAGGATGCAGAGAGAGGAGGGCCAAAAGCACCCCCAAGGAATAAGATGGCACTCTATGAACAATTCAGCCTCCCTTCTCAAAATTTTGCACCAGGATCAGCATCCTTGTTTCCACTTCCGCTCAGAAACTACACAGGCCCTACATCATCTAGCCACATCAGTAGCAATCAAAGCATCCAATTTTGCACCTCTAGCATGCCTTCTATTCTGGCTGAGAAGAGTCAAACCTATAATTCCAGAAAGACTAACTTAACCAAATTCATGCAAGATGATTTCATTAATAGTAAGAATTCTCTGAGAACACTTGATGGCGAAGATACTTTTATAACTTGTGGTTCTGCACATAGAAAAAACTCATCCTGTAGCATCATCCAAAATTTTAAAGATGAAGACAAACTTTCTCATAGTAATTTGAGCGGTTCGCTTAAAAGTCCAAATTCATTTAGAAAGGTGAATTCACCTGGTGCTGTAGACCTGAAGTCAGCACAATATGGGAAGAACCGGATGGAGGATCATACTGAAGTGAGTCAAAATGGTCAGAAGCCAGAGGAAGTGCTTCCTCACTCATTAGATGGTTTTGGTGACATGACAGATGCATCATTAATCTCATTGGTGAAAGGTAGCAGTGTCCGTACACATGAAGAGCTTGCAGTTTTTGAGGACCAAGTAAACTCAAGGGACCATCACATTGAGAAGCCAACAGCTAATGATGTACACAAATGTGCTGGTGAGTTAGAAATTGGTAGAAGGTGCTTCCTGGACAAGGTAGACATGAATGAAGATGAGGAGACATATAGGCATTCTGATGCTGTAAGTAAAGTTAACTCAGAATGTACATTGGCTATGGATATTTCCCCTGACAATGTTGTAGGAGCTATAGGTGAACAACAATTTTGGAAAGTCAGAAGAACTATCATTAATCAACAGAAAATCTTTGTCAAGCAAGTGTTTGAGTTGCATAGACTGATAAAGGTGCAAAGATTAATAGCAGGCTCACCCCATGTATTGCTTGAAGATAACCTTTTACTTAACAAGCCACCACCAAAAACATCCACAAGCAAGAAGTTTCAATCTGACTTTGCCAGCCAAAAACCATCATCAGTTGTTAAACTTGACAATAAATCTGTGAAGGTCAATACTGCTGAGAAGGCTACAAACAGCGCAGTTGGGAAGATTCCCATTCCTTGTATCAGCAACACAACCAAAGGTCATGCTAATCAGCTGCCAAACTATGGCCATCATTTAGGAAACCCTGCATTAGCCTCTGCAGATTCAAATTCCAAACAGTCGCCAAGCTATGTCTACCCCCCACCTGGGAACCAGTGGCTAGTTCCTGTCATGTCCCCATCTGAAGGCCTAGTATACAAACCAATCATATGGCCATGCCCTCCAAATGCAGGCTTCATGGCACCCATATATGGTTCTTGTGGCACAGTGAGCTTCAATCCTCTAAGCAAGGATGCTTCTTCAGATGCAGCTCTTGCTCCAAGTTCTCACCAAAAGCTTGGAATCCTTTCTGGTTCATCTTTACCCCAGTTCTTACCACCATCATTCATGAATCATCCATCTTCTATATCAGCTTCAGCTGTTGAGCAAATGGGGCAATCTAATGGTCCTGAAAATCACCACTCATGGGGTGAAGTCAATTCTGCCATACTGTTCCAAAGCTCATCTAACATGTCAAGCCCCACAAGTCAAGTGATGCCAAGAAACATTTCAACTTATCATCACTCACTGCAAGATAAAGAACTGCATAGAAGCACAGCTAGCAGTCCCTCCAAGAGGGTAAGTGGAGAAGCGCTTCCTTTGTTTCCTTTGGCACCAACATGTTGGCAATCAGAAGATACAAACACACAGGTTGAACAACAACCACGAGTAATCAAAGCTATGCCTCACAATCCAAAAACAGCAAGTGAAACAGCTGCCAAGATATTCAGGTCAATACAAGAAGAAAGGAAACATTTGTAA
>Glyma07g01601.1 sequence type=predicted peptide gene model=Glyma07g01601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMNRMSGGIEEDKEISPMFPRLHVKDAERGGPKAPPRNKMALYEQFSLPSQNFAPGSASLFPLPLRNYTGPTSSSHISSNQSIQFCTSSMPSILAEKSQTYNSRKTNLTKFMQDDFINSKNSLRTLDGEDTFITCGSAHRKNSSCSIIQNFKDEDKLSHSNLSGSLKSPNSFRKVNSPGAVDLKSAQYGKNRMEDHTEVSQNGQKPEEVLPHSLDGFGDMTDASLISLVKGSSVRTHEELAVFEDQVNSRDHHIEKPTANDVHKCAGELEIGRRCFLDKVDMNEDEETYRHSDAVSKVNSECTLAMDISPDNVVGAIGEQQFWKVRRTIINQQKIFVKQVFELHRLIKVQRLIAGSPHVLLEDNLLLNKPPPKTSTSKKFQSDFASQKPSSVVKLDNKSVKVNTAEKATNSAVGKIPIPCISNTTKGHANQLPNYGHHLGNPALASADSNSKQSPSYVYPPPGNQWLVPVMSPSEGLVYKPIIWPCPPNAGFMAPIYGSCGTVSFNPLSKDASSDAALAPSSHQKLGILSGSSLPQFLPPSFMNHPSSISASAVEQMGQSNGPENHHSWGEVNSAILFQSSSNMSSPTSQVMPRNISTYHHSLQDKELHRSTASSPSKRVSGEALPLFPLAPTCWQSEDTNTQVEQQPRVIKAMPHNPKTASETAAKIFRSIQEERKHL* >Glyma07g01601.2 sequence type=predicted peptide gene model=Glyma07g01601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMNRMSGGIEEDKEISPMFPRLHVKDAERGGPKAPPRNKMALYEQFSLPSQNFAPGSASLFPLPLRNYTGPTSSSHISSNQSIQFCTSSMPSILAEKSQTYNSRKTNLTKFMQDDFINSKNSLRTLDGEDTFITCGSAHRKNSSCSIIQNFKDEDKLSHSNLSGSLKSPNSFRKVNSPGAVDLKSAQYGKNRMEDHTEVSQNGQKPEEVLPHSLDGFGDMTDASLISLVKGSSVRTHEELAVFEDQVNSRDHHIEKPTANDVHKCAGELEIGRRCFLDKVDMNEDEETYRHSDAVSKVNSECTLAMDISPDNVVGAIGEQQFWKVRRTIINQQKIFVKQVFELHRLIKVQRLIAGSPHVLLEDNLLLNKPPPKTSTSKKFQSDFASQKPSSVVKLDNKSVKVNTAEKATNSAVGKIPIPCISNTTKGHANQLPNYGHHLGNPALASADSNSKQSPSYVYPPPGNQWLVPVMSPSEGLVYKPIIWPCPPNAGFMAPIYGSCGTVSFNPLSKDASSDAALAPSSHQKLGILSGSSLPQFLPPSFMNHPSSISASAVEQMGQSNGPENHHSWGEVNSAILFQSSSNMSSPTSQVMPRNISTYHHSLQDKELHRSTASSPSKRVSGEALPLFPLAPTCWQSEDTNTQVEQQPRVIKAMPHNPKTASETAAKIFRSIQEERKHL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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