Glyma07g01310 - SoyBase

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Report for Sequence Feature Glyma07g01310

Feature Type:	gene_model
Chromosome:	Gm07
Start:	827261
stop:	831047
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55180	AT	Annotation by Michelle Graham. TAIR10: phospholipase D alpha 4 \| chr1:20585057-20587629 REVERSE LENGTH=762	SoyBase	E_val: 0	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009395	GO-bp	Annotation by Michelle Graham. GO Biological Process: phospholipid catabolic process	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0045848	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of nitrogen utilization	SoyBase	N/A	ISS
GO:0046470	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylcholine metabolic process	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0051365	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to potassium ion starvation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG1329	KOG	Phospholipase D1	JGI		ISS
PTHR18896	Panther	PHOSPHOLIPASE D	JGI		ISS
PTHR18896:SF30	Panther	PLDEPSILON (PHOSPHOLIPASE D ALPHA 4), PHOSPHOLIPAS	JGI		ISS
PF12357	PFAM	Phospholipase D C terminal	JGI		ISS
UniRef100_I1KGD7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D n=1 Tax=Glycine max RepID=I1KGD7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337D8D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337D8D related cluster n=1 Tax=unknown RepID=UPI0002337D8D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g01310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01310

Paralog	Evidence	Comments
Glyma08g20710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g010900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g01310

Limit To All Plant Sequences

>Glyma07g01310.1   sequence type=CDS   gene model=Glyma07g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAATTGAAGCTACTATCTTCAATGCGTCACCTTACTCACCTTTATTTCCCTTCAATCTTTTTCCCTTGTTTTCAGTGCATATGTGCAAATGGAAATCCTGCTTATGTGACTATAAAGATAGACAGCCAGAAGTTAGCAAAAACCAGCCAAGAAAGCAACCGTGTGTGGAACCAAACTTTTCAGATTCAATGTGCTCATCCAGCTGATTCATGCATCACCATAACACTGAAAACATCGAGTTCTTCCATATTGGGGAAGTTCCATATTCAGGCTCAGCAGCTACTGAAGAAAGGAGGTTTGATCAATGGTTTCTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTTAAATTGAAGTTCCAGTTATGGTTCAAGCCGGCAGAATTAGAACCAAGTTGGGCGAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAGGGAGGCTACCTTCCCACTAAGGTCCAATTGTCAGGTCAAACTTTACCATGATGCTCACCATTCTTCTGCTTTTCAACCTCCATTTGATCTATGTGGAGCTCCAAAAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGGTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCTCACAGAAATCCCACGTGCCAGAGGAATAAAGTTAGGTGAACTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTGTTATGAACAAAGGTGAGCTGAACAACCAAGATGAGGAAGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGGTCACACCATATGTTCCCCACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACCAAAGCACCCAAATCTGTCGGTGACAGAGAACTTATGAGCTTTCTGGGTGGATTAGATCTGTGTGATGGAAGATATGACTCAGAGCAACATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGACTTCTACCAAACAAGCATTGAAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAAAACCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGATCCTTCTTTTCTAGTCCCTTCTAGCACCTTAGCAAATCTTATGCCTAGGACAAGCTCAAGCACTCCTACGGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTCTCAGTTGGTGAGTTGTCTACAAAGTTAAATGTGGAGAGGAGCATCCATGAGGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATTTACATTGAAAACCAATGTTTCATTGGGGGGTGCCATTGGTGGAAGAAAGATAGGCACAGTGGCTGCACTAATCTAATTCCAATTGAAATTGCACTAAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTTCCGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACCCGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGACGCAATACAAGAAAGTGGAGAACCAGCACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAGCAGAAGGGACAAGGGGAGTATCTTCCACTAGATTCTCCCCAACCTGAAACTCAATACTGGAATGCTCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAACTTCATGATAGTGGACGACCTGTACATATTGATAGGATCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATAGCCATTGGATGCTACCAGTCTCAAGATGGAGATGATAACAACCAAATGAACCTAGATGATATTCAAGCATATAGAATGTCTCTATGGTATGAGCACACTGTTAGTGTTGATGAGTTGTTCTTAGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGCGCTCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAACTTACCCTGTGAGAGTAACACAAGAAGGGTATGTGAAAGACCTCACTGATGGAGTTCACTTTCCTGATACAAATTCTTTAGTGAAAGGGAAAAGGTCTAAAATATTGCCCCCTATCTTTACCACTTAG

Predicted protein sequences of Glyma07g01310

Limit To All Plant Sequences

>Glyma07g01310.1   sequence type=predicted peptide   gene model=Glyma07g01310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQLKLLSSMRHLTHLYFPSIFFPCFQCICANGNPAYVTIKIDSQKLAKTSQESNRVWNQTFQIQCAHPADSCITITLKTSSSSILGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLKLKFQLWFKPAELEPSWAKMLSNDWEFQGLREATFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMMVLVRDPLTEIPRARGIKLGELLKKKAEEGVAVRVMLWDDETSLPFVMNKGELNNQDEEAFAYFNHTKVICRKCPRSHHMFPTLFAHHQKTITVDTKAPKSVGDRELMSFLGGLDLCDGRYDSEQHSLFQTLIRESHCYDFYQTSIEGASLNKGGPRKPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSFLVPSSTLANLMPRTSSSTPTERNWKVQVYRSIDHVSVGELSTKLNVERSIHEAYVEAIRRAERFIYIENQCFIGGCHWWKKDRHSGCTNLIPIEIALKVVSKIKAKERFSVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGDAIQESGEPAHPRDYLNFFCLANREQKGQGEYLPLDSPQPETQYWNAQKNRRFMVYVHSNFMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDGDDNNQMNLDDIQAYRMSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEIVDMEGVHLVTYPVRVTQEGYVKDLTDGVHFPDTNSLVKGKRSKILPPIFTT*

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