Report for Sequence Feature Glyma07g01170
Feature Type: gene_model
Chromosome: Gm07
Start: 703550
stop: 705769
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g01170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13850 AT
Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 22 | chr3:4559910-4560716 FORWARD LENGTH=268
SoyBase E_val: 5.00E-58 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF03195 PFAM
Protein of unknown function DUF260
JGI ISS
UniRef100_G7LHF8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LHF8_MEDTR
SoyBase E_val: 1.00E-101 ISS
UniRef100_UPI0002337D88 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337D88 related cluster n=1 Tax=unknown RepID=UPI0002337D88
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g01170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g01170
Paralog Evidence Comments
Glyma08g20550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g01170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g009500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g01170
Coding sequences of Glyma07g01170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g01170.2 sequence type=CDS gene model=Glyma07g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACAACAATAACCCTAACAACAACAACACCAATAACAGAATCTCAACACCAAGAAATGGCAACAGCGCCACCCAGGCCTGTGCTGCATGCAAGTACCAACGCAGAAAGTGTGCACCTGATTGCATCCTTGCACCTTACTTCCCCCATGATCGCCAGCGCCAGTTCCTCAACGCGCACAAGTTGTTCGGCGTGAGCAACATCACCAAGATCATCAAGCTTCTCAGCCCTCAGGACAAGGACCAAGCCATGCGCACCATCATCTATCAATCCGACATGCGCGCTACAGACCCAGTTGGTGGTTGCTACAGGTACATTCTCGAACTCCAGGCCCAAATCGAGTACTATAGGGCGGAACTCGAACTCGTCCTTCAACAACTCGCCATCTTCAGAGCCCAGGCTCAGCACCAACACCAACAACAACATGGTATCTTTGCTGCAAACAACGTTAATGTAGCTGTCAATGGTGATGGTGAGGTTTTGAACGGTGATCCAATGGGCTTGTATAACCAGCAACAACACTATCAGTGTCTGCAGGCACAACAGGAGGAGGAGCAGTATGTTATGATGCACGAAAATGGTAATGGAAGCCAAAACATCGATGGCATTGCTTTGCAGGAGCAAATTAAAACGTGGGCTGTGCAGAACACTGCTGTGTCGCTTTCTTCGTTGTCATTGCATGGGCAGAATAGTAATGTCAGCGATGAGTATGATCACAAGCCGGTGGTGGGGATTGACATGGATTCTGATGAGAGAAGCGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAAGCAGTTTTGTTTAAGATAGACGATGCAGTAATAAAAGCGGAGGCTAATCCCTGCATGCAACAAGCTCAAGACCATGACCTGAAAGGTGCAGCAACATCGTTTACTCTCACAAATTGTAGTTGCTGA
Predicted protein sequences of Glyma07g01170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g01170.2 sequence type=predicted peptide gene model=Glyma07g01170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNNNNPNNNNTNNRISTPRNGNSATQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKLLSPQDKDQAMRTIIYQSDMRATDPVGGCYRYILELQAQIEYYRAELELVLQQLAIFRAQAQHQHQQQHGIFAANNVNVAVNGDGEVLNGDPMGLYNQQQHYQCLQAQQEEEQYVMMHENGNGSQNIDGIALQEQIKTWAVQNTAVSLSSLSLHGQNSNVSDEYDHKPVVGIDMDSDERSELGFESEELVHRSDEAVLFKIDDAVIKAEANPCMQQAQDHDLKGAATSFTLTNCSC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
