Glyma07g01141 - SoyBase

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Report for Sequence Feature Glyma07g01141

Feature Type:	gene_model
Chromosome:	Gm07
Start:	689725
stop:	697990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01141

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C6T2V6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T2V6_SOYBN	SoyBase	E_val: 3.00E-33	ISS

Expression Patterns of Glyma07g01141

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g01141 not represented in the dataset	Glyma07g01141 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01141

Paralog	Evidence	Comments
Glyma08g20531	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01141 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g009200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01141

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g01141

Limit To All Plant Sequences

>Glyma07g01141.2   sequence type=transcript   gene model=Glyma07g01141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTGTACAGACCAAACAAAGCCTTAAGTCTGTACCTAGAAACGACGACGTTGTCGTTTGTAGCAAACACACACGCAGTAGCTAGCGCCCCCTTGTTTGTAGGTCCGAGGTTAAGGGAAACATCGGTGTGGTGTGGTTTTGATTCGCTGTGTCCAATCCAATCCAATCCATTCTCTTTCCCTCTTCTTCTCATATCGTTTTAAAGGTTTCATCTTTTCTTAATTCCAGCTAGTCTGACTTAGATATGGCGGTAAAACCAACAGTTGCATTAAGGGCTATTCTTGTTGGAGGCATAGCAGCATTTGCTAAAATAGCAGGTGCTATGAAAGCTGCAGGTGGTGCAAAAATGGGCGCAGCTGCAGCTGCCATGACAGCAGCAGCAACTGCAGCTGTGGCAGGGTCCAAACAAGAGCAAACAGATGCTTCTCAACAGTCTCCAAAATAATTATCTGTATTTTTTCTTCCAGTTTTACACTGTGTGTTGGTAAGTTTCTGTAGCCTAGTTGAATATTCCAAGTGGAAGAAAGAGGCCATATGTGAATTATAGTCTTGACACATGGTGATAACCTCTTCAAAGTCTTTGTAATAAGATTACACTAAATTTATACAGTTCCTGAAGTTTTAGATGGAGCTATGGTTGGATTTCATAGACAAAACTAAAGTCTCAGCCGATTAGTTTGTGAATTAGATTTTGTAAATCTTATTTTGCTAAGAAATGAGTTATCTTTGAAGTAATTTGTGGTGTTTGAACTTTGAATATTATTGATAAGATAATTTGTCAAAGTACATATAGGAAAAGGGTTTGGTTTTAGAAATAAATATAAAATATGCACT

Coding sequences of Glyma07g01141

Limit To All Plant Sequences

>Glyma07g01141.1   sequence type=CDS   gene model=Glyma07g01141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTAAAACCAACAGTTGCATTAAGGGCTATTCTTGTTGGAGGCATAGCAGCATTTGCTAAAATAGCAGGTGCTATGAAAGCTGCAGGTGGTGCAAAAATGGGCGCAGCTGCAGCTGCCATGACAGCAGCAGCAACTGCAGCTGTGGCAGGGTCCAAACAAGAGCAAACAGATGCTTCTCAACAGTCTCCAAAATAA

>Glyma07g01141.2   sequence type=CDS   gene model=Glyma07g01141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTAAAACCAACAGTTGCATTAAGGGCTATTCTTGTTGGAGGCATAGCAGCATTTGCTAAAATAGCAGGTGCTATGAAAGCTGCAGGTGGTGCAAAAATGGGCGCAGCTGCAGCTGCCATGACAGCAGCAGCAACTGCAGCTGTGGCAGGGTCCAAACAAGAGCAAACAGATGCTTCTCAACAGTCTCCAAAATAA

Predicted protein sequences of Glyma07g01141

Limit To All Plant Sequences

>Glyma07g01141.1   sequence type=predicted peptide   gene model=Glyma07g01141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVKPTVALRAILVGGIAAFAKIAGAMKAAGGAKMGAAAAAMTAAATAAVAGSKQEQTDASQQSPK*

>Glyma07g01141.2   sequence type=predicted peptide   gene model=Glyma07g01141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVKPTVALRAILVGGIAAFAKIAGAMKAAGGAKMGAAAAAMTAAATAAVAGSKQEQTDASQQSPK*

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