Glyma07g01110 - SoyBase

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Report for Sequence Feature Glyma07g01110

Feature Type:	gene_model
Chromosome:	Gm07
Start:	663083
stop:	668420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13800	AT	Annotation by Michelle Graham. TAIR10: Metallo-hydrolase/oxidoreductase superfamily protein \| chr3:4538879-4541366 FORWARD LENGTH=361	SoyBase	E_val: 3.00E-172	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR12553	Panther	ELAC RELATED	JGI		ISS
PTHR12553:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00753	PFAM	Metallo-beta-lactamase superfamily	JGI		ISS
UniRef100_G7LHH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase-like protein n=2 Tax=Medicago truncatula RepID=G7LHH5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KGB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGB2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g01110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01110

Paralog	Evidence	Comments
Glyma08g20510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g009000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g01110

Limit To All Plant Sequences

>Glyma07g01110.2   sequence type=transcript   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGATATCTAAACATACACTTAAATTAAAAAGTCTAAACTAAGTTAAAATTAGCTTTTTCCTTGTTTTATGTTTCCCTTGGGGAAAAGCGAAGAGAGGCAAAACACAACACAACACAACACACGTGTGTAATTGTTTATGTGACTGACACACACACACTACACACATTGAATCAATCAATGGTGGTTGCATCCATTCGGCTTCTTCCTTCTCCACTCCTCTCTTTCGCTCCTCGTCGCTCTCCATATTCATATTCATGGCGCTCTCATCCCTCTTTAACCATTCCCTTCTCTTCCATCCACTCCACTTCTACTAAGGGAGATGGTGGAGCAGTGGAATTGGGTGGTGATCAAACAGAGCTTATATTTTTGGGGACTGGAACCAGTGAAGGGGTTCCACGTGTCAGCTGCTTGACTAACCCTTTACTCAAATGTGAGGTGTGTTCAAAAGCTGCTCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCATCCTCATTCGTCACCCCAATTCCTCAGGAACACACAATAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCATTGGTTTCCTGCTTTTGGGATAAGAACAATTGATGCGGTCATTATTACTCATTCACATGCTGATGCAATCGGAGGTCTTGATGATCTTAGAGATTGGACAAACAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGCGACTTCGAGGTGATGACGAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCTGGGGCCAAAGTCTCAGAGTTGCAATTCAATATCATATCGGAAGAACCATTTTTTGTACATGAACTGAAGTTCACCCCATTACCAGTGTGGCACGGCCAGAATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGTGACATTCCTGAAGAAACTTATCCACTTCTAAAAGACTGTGAAATTCTAATCCTGGATGCTTTGAGGCCTGACCGCTCTACTTCTACACATTTTGGACTTCAAAGGGCCTTGGAGGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACCGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTCCCTTGCGAAACTATTGGAGTCTGAAGGCCTTGATGCACAACTGAGCTATGATGGGCTTCGTATACCAATCAGACTCTAGTTTGTATACAGTCTCATTCATAAGACAACTATTTTTTTTTTCTCAAAGAGAAATTATTAAATAAACATTCAAATGATTTTACAAGTTCATACATTCTGCAGGTTCCTGCAACTATTCTACCTTCTTCCTATCATCATTGATCATTCTTTCTTTTCTCCTTGCCTCTGTTAGAGACAAGAAACACCTACGATGATACTATTACCATAAATGTAACAAAGGAGGATTTTTTTTCCCCATGCAATGAAAGATTTAATTTTTTTAATATGATCGTACAGTATGGAGAGCTAATAATGTAAAATTTAATTAAGTCCACATTTAAATAATGACGAATTTTAAGAGTTGATGACATTTCAGTTTTTTTGAGAAACTATAATATAAACTCCAATGGGTAGATCCACTCAAAAGGAGGTCTATGTATAACAAATTAACAATGTTGGAGGACAGGTTTGGACGCTGAAGCTCTCACTAGTTTGGAATCGGTACTTTGACAGTGACAAGTTGACAATCAGACATTTCAAGTAGTGTATACTATTGTTGCCCTATCATAAACGCAATTGGAGCTTATTGTCATAATTTGTATTTTTTGGGGCCTATAGTATACAGTTCCCACATAGAAATTCATGTTGAGTTGAGATGATGGTCCACCATGTTTTCTAGGCACCGAGTCAATCAAAGATTGGTGTTACGTTCAGAAAAGCTAGTACTTTTCTTTTTTGTTGTTCGCAAAATGGATCACGTAATACCTGCAGTTTTATTATGAGTGGACGATAGATTTTGCAAAGTTTTGGAATAATAATATTAATATATGATAAAGAAGGTCTGTGTATAACAATACGACAGAATTGGAATGTTAGGTCGAGTGTTTGAACGGGGG

>Glyma07g01110.3   sequence type=transcript   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGATATCTAAACATACACTTAAATTAAAAAGTCTAAACTAAGTTAAAATTAGCTTTTTCCTTGTTTTATGTTTCCCTTGGGGAAAAGCGAAGAGAGGCAAAACACAACACAACACAACACACGTGTGTAATTGTTTATGTGACTGACACACACACACTACACACATTGAATCAATCAATGGTGGTTGCATCCATTCGGCTTCTTCCTTCTCCACTCCTCTCTTTCGCTCCTCGTCGCTCTCCATATTCATATTCATGGCGCTCTCATCCCTCTTTAACCATTCCCTTCTCTTCCATCCACTCCAAAGCTTCTACTAAGGGAGATGGTGGAGCAGTGGAATTGGGTGGTGATCAAACAGAGCTTATATTTTTGGGGACTGGAACCAGTGAAGGGGTTCCACGTGTCAGCTGCTTGACTAACCCTTTACTCAAATGTGAGGTACATAACATTATTCAACACAACCATGTTCATGTTATTATTGATGAATGAATTTGACATTATGGAATGGAATCTTTAGGTTTTTTTATTGGTTTTGGTATTATGATTGTTGGTTATTGCAGGTGTGTTCAAAAGCTGCTCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCATCCTCATTCGTCACCCCAATTCCTCAGGAACACACAATAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCATTGGTTTCCTGCTTTTGGGATAAGAACAATTGATGCGGTCATTATTACTCATTCACATGCTGATGCAATCGGAGGTCTTGATGATCTTAGAGATTGGACAAACAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGCGACTTCGAGGTGATGACGAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCTGGGGCCAAAGTCTCAGAGTTGCAATTCAATATCATATCGGAAGAACCATTTTTTGTACATGAACTGAAGTTCACCCCATTACCAGTGTGGCACGGCCAGAATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGTGACATTCCTGAAGAAACTTATCCACTTCTAAAAGACTGTGAAATTCTAATCCTGGATGCTTTGAGGCCTGACCGCTCTACTTCTACACATTTTGGACTTCAAAGGGCCTTGGAGGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACCGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTCCCTTGCGAAACTATTGGAGTCTGAAGGCCTTGATGCACAACTGAGCTATGATGGGCTTCGTATACCAATCAGACTCTAGTTTGTATACAGTCTCATTCATAAGACAACTATTTTTTTTTTCTCAAAGAGAAATTATTAAATAAACATTCAAATGATTTTACAAGTTCATACATTCTGCAGGTTCCTGCAACTATTCTACCTTCTTCCTATCATCATTGATCATTCTTTCTTTTCTCCTTGCCTCTGTTAGAGACAAGAAACACCTACGATGATACTATTACCATAAATGTAACAAAGGAGGATTTTTTTTCCCCATGCAATGAAAGATTTAATTTTTTTAATATGATCGTACAGTATGGAGAGCTAATAATGTAAAATTTAATTAAGTCCACATTTAAATAATGACGAATTTTAAGAGTTGATGACATTTCAGTTTTTTTGAGAAACTATAATATAAACTCCAATGGGTAGATCCACTCAAAAGGAGGTCTATGTATAACAAATTAACAATGTTGGAGGACAGGTTTGGACGCTGAAGCTCTCACTAGTTTGGAATCGGTACTTTGACAGTGACAAGTTGACAATCAGACATTTCAAGTAGTGTATACTATTGTTGCCCTATCATAAACGCAATTGGAGCTTATTGTCATAATTTGTATTTTTTGGGGCCTATAGTATACAGTTCCCACATAGAAATTCATGTTGAGTTGAGATGATGGTCCACCATGTTTTCTAGGCACCGAGTCAATCAAAGATTGGTGTTACGTTCAGAAAAGCTAGTACTTTTCTTTTTTGTTGTTCGCAAAATGGATCACGTAATACCTGCAGTTTTATTATGAGTGGACGATAGATTTTGCAAAGTTTTGGAATAATAATATTAATATATGATAAAGAAGGTCTGTGTATAACAATACGACAGAATTGGAATGTTAGGTCGAGTGTTTGAACGGGGG

Coding sequences of Glyma07g01110

Limit To All Plant Sequences

>Glyma07g01110.1   sequence type=CDS   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTTGCATCCATTCGGCTTCTTCCTTCTCCACTCCTCTCTTTCGCTCCTCGTCGCTCTCCATATTCATATTCATGGCGCTCTCATCCCTCTTTAACCATTCCCTTCTCTTCCATCCACTCCAAAGCTTCTACTAAGGGAGATGGTGGAGCAGTGGAATTGGGTGGTGATCAAACAGAGCTTATATTTTTGGGGACTGGAACCAGTGAAGGGGTTCCACGTGTCAGCTGCTTGACTAACCCTTTACTCAAATGTGAGGTGTGTTCAAAAGCTGCTCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCATCCTCATTCGTCACCCCAATTCCTCAGGAACACACAATAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCATTGGTTTCCTGCTTTTGGGATAAGAACAATTGATGCGGTCATTATTACTCATTCACATGCTGATGCAATCGGAGGTCTTGATGATCTTAGAGATTGGACAAACAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGCGACTTCGAGGTGATGACGAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCTGGGGCCAAAGTCTCAGAGTTGCAATTCAATATCATATCGGAAGAACCATTTTTTGTACATGAACTGAAGTTCACCCCATTACCAGTGTGGCACGGCCAGAATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGTGACATTCCTGAAGAAACTTATCCACTTCTAAAAGACTGTGAAATTCTAATCCTGGATGCTTTGAGGCCTGACCGCTCTACTTCTACACATTTTGGACTTCAAAGGGCCTTGGAGGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACCGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTCCCTTGCGAAACTATTGGAGTCTGAAGGCCTTGATGCACAACTGAGCTATGATGGGCTTCGTATACCAATCAGACTCTAG

>Glyma07g01110.2   sequence type=CDS   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTTGCATCCATTCGGCTTCTTCCTTCTCCACTCCTCTCTTTCGCTCCTCGTCGCTCTCCATATTCATATTCATGGCGCTCTCATCCCTCTTTAACCATTCCCTTCTCTTCCATCCACTCCACTTCTACTAAGGGAGATGGTGGAGCAGTGGAATTGGGTGGTGATCAAACAGAGCTTATATTTTTGGGGACTGGAACCAGTGAAGGGGTTCCACGTGTCAGCTGCTTGACTAACCCTTTACTCAAATGTGAGGTGTGTTCAAAAGCTGCTCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCATCCTCATTCGTCACCCCAATTCCTCAGGAACACACAATAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCATTGGTTTCCTGCTTTTGGGATAAGAACAATTGATGCGGTCATTATTACTCATTCACATGCTGATGCAATCGGAGGTCTTGATGATCTTAGAGATTGGACAAACAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGCGACTTCGAGGTGATGACGAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCTGGGGCCAAAGTCTCAGAGTTGCAATTCAATATCATATCGGAAGAACCATTTTTTGTACATGAACTGAAGTTCACCCCATTACCAGTGTGGCACGGCCAGAATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGTGACATTCCTGAAGAAACTTATCCACTTCTAAAAGACTGTGAAATTCTAATCCTGGATGCTTTGAGGCCTGACCGCTCTACTTCTACACATTTTGGACTTCAAAGGGCCTTGGAGGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACCGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTCCCTTGCGAAACTATTGGAGTCTGAAGGCCTTGATGCACAACTGAGCTATGATGGGCTTCGTATACCAATCAGACTCTAG

>Glyma07g01110.3   sequence type=CDS   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGACATTATGGAATGGAATCTTTAGGTTTTTTTATTGGTTTTGGTATTATGATTGTTGGTTATTGCAGGTGTGTTCAAAAGCTGCTCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCATCCTCATTCGTCACCCCAATTCCTCAGGAACACACAATAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCATTGGTTTCCTGCTTTTGGGATAAGAACAATTGATGCGGTCATTATTACTCATTCACATGCTGATGCAATCGGAGGTCTTGATGATCTTAGAGATTGGACAAACAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGCGACTTCGAGGTGATGACGAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCTGGGGCCAAAGTCTCAGAGTTGCAATTCAATATCATATCGGAAGAACCATTTTTTGTACATGAACTGAAGTTCACCCCATTACCAGTGTGGCACGGCCAGAATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGTGACATTCCTGAAGAAACTTATCCACTTCTAAAAGACTGTGAAATTCTAATCCTGGATGCTTTGAGGCCTGACCGCTCTACTTCTACACATTTTGGACTTCAAAGGGCCTTGGAGGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACCGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTCCCTTGCGAAACTATTGGAGTCTGAAGGCCTTGATGCACAACTGAGCTATGATGGGCTTCGTATACCAATCAGACTCTAG

Predicted protein sequences of Glyma07g01110

Limit To All Plant Sequences

>Glyma07g01110.1   sequence type=predicted peptide   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVASIRLLPSPLLSFAPRRSPYSYSWRSHPSLTIPFSSIHSKASTKGDGGAVELGGDQTELIFLGTGTSEGVPRVSCLTNPLLKCEVCSKAAQPGNKNRRLNTSILIRHPNSSGTHNNILIDAGKFFYHSALHWFPAFGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVAKRDFEVMTKTHYYLVDTSVILPGAKVSELQFNIISEEPFFVHELKFTPLPVWHGQNYRSLGFRFGNICYISDVSDIPEETYPLLKDCEILILDALRPDRSTSTHFGLQRALEEVRKIQPKRTLFTGMMHLMDHEEVNDSLAKLLESEGLDAQLSYDGLRIPIRL*

>Glyma07g01110.2   sequence type=predicted peptide   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVASIRLLPSPLLSFAPRRSPYSYSWRSHPSLTIPFSSIHSTSTKGDGGAVELGGDQTELIFLGTGTSEGVPRVSCLTNPLLKCEVCSKAAQPGNKNRRLNTSILIRHPNSSGTHNNILIDAGKFFYHSALHWFPAFGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVAKRDFEVMTKTHYYLVDTSVILPGAKVSELQFNIISEEPFFVHELKFTPLPVWHGQNYRSLGFRFGNICYISDVSDIPEETYPLLKDCEILILDALRPDRSTSTHFGLQRALEEVRKIQPKRTLFTGMMHLMDHEEVNDSLAKLLESEGLDAQLSYDGLRIPIRL*

>Glyma07g01110.3   sequence type=predicted peptide   gene model=Glyma07g01110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLTLWNGIFRFFYWFWYYDCWLLQVCSKAAQPGNKNRRLNTSILIRHPNSSGTHNNILIDAGKFFYHSALHWFPAFGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVAKRDFEVMTKTHYYLVDTSVILPGAKVSELQFNIISEEPFFVHELKFTPLPVWHGQNYRSLGFRFGNICYISDVSDIPEETYPLLKDCEILILDALRPDRSTSTHFGLQRALEEVRKIQPKRTLFTGMMHLMDHEEVNDSLAKLLESEGLDAQLSYDGLRIPIRL*

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