Report for Sequence Feature Glyma07g01020
Feature Type: gene_model
Chromosome: Gm07
Start: 591953
stop: 593550
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g01020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72690 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27361223-27361745 FORWARD LENGTH=87
SoyBase E_val: 3.00E-26 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_C6T491 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T491_SOYBN
SoyBase E_val: 2.00E-61 ISS
Expression Patterns of Glyma07g01020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g01020
Paralog Evidence Comments
Glyma08g20410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g01020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g008200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g01020
Coding sequences of Glyma07g01020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g01020.1 sequence type=CDS gene model=Glyma07g01020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGATATGGAACCAAAGCCTAAAGACTCGCCTTCAGAAAAAAAAGTGAAAACTCCAAACATTTTTGAGCGAGCTAAGGAGGAGATTGAGGCAGTGTTTCATCGCGACAAATCGCCACACCATCACAAAGAAACTCATGGGACAAGTGATGACATTGATGAGGGAACTTCACCTGATGAAATCAAAGCGCCTGGTGTGTTTGAACGGGTGAAGGAGGAGATTGAAGCTGTTGCTGAGGCCATTCATCCCAAGAAAGAATCTGAATCTGGCACTCGTGATGTGTCGTCACCAAAGTGA
Predicted protein sequences of Glyma07g01020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g01020.1 sequence type=predicted peptide gene model=Glyma07g01020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADMEPKPKDSPSEKKVKTPNIFERAKEEIEAVFHRDKSPHHHKETHGTSDDIDEGTSPDEIKAPGVFERVKEEIEAVAEAIHPKKESESGTRDVSSPK*