Glyma07g01000 - SoyBase

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Report for Sequence Feature Glyma07g01000

Feature Type:	gene_model
Chromosome:	Gm07
Start:	580321
stop:	583868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60970	AT	Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein \| chr1:22448008-22449387 REVERSE LENGTH=177	SoyBase	E_val: 1.00E-84	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0030125	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat	SoyBase	N/A	ISS
KOG3343	KOG	Vesicle coat complex COPI, zeta subunit	JGI		ISS
PTHR11043	Panther	ZETA-COAT PROTEIN	JGI		ISS
PF01217	PFAM	Clathrin adaptor complex small chain	JGI		ISS
UniRef100_I1KG99	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KG99_SOYBN	SoyBase	E_val: 2.00E-134	ISS
UniRef100_Q9MAZ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nonclathrin coat protein zeta1-COP n=1 Tax=Glycine max RepID=Q9MAZ9_SOYBN	SoyBase	E_val: 2.00E-112	ISS

Expression Patterns of Glyma07g01000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01000

Paralog	Evidence	Comments
Glyma08g20370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g008000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g01000

Limit To All Plant Sequences

>Glyma07g01000.2   sequence type=transcript   gene model=Glyma07g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTATTTACCGAATTGCCCTTCTCCCTTAACAATAAAAATTCATAATTCCTTATTTGCTCCTTCTCATTACAGATCTTCCAAACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACCAAGACTGTTAAGACAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACATTAACTCAAGCCTGGGCTACGGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGTTTGCATACACTGAAAATGAGCTACTTATAGTCGAATATCCAATTTTTTGTCTGTTAATGGGAGTTGTTTCATCCCCCATTGCGAGTTATTGTAATGAGCACCATACCATTTTTCTGAAAAGTGTGTTCCGCGTGCATCTTAGCTATTATTTGTCAAATTCGTGGAAGAAGTTATTGATCGAAATATTGTGATATTCAAGTTATGGTTGAGATTTGGTTCCCCAGAATTTACAGTAAATTCTAAATATTTTTTAATCAATATATTTTAAATTTATCATATTAAATATTTTAAACCA

Coding sequences of Glyma07g01000

Limit To All Plant Sequences

>Glyma07g01000.1   sequence type=CDS   gene model=Glyma07g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACCAAGACTGTTAAGACAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGGTAATGCAACTCTGTTTTGACTTGGTGTGTGTTTGGGAAGCAATTGAACCCAACGCAACATACTTTATGAAAGCTACAGCATAG

>Glyma07g01000.2   sequence type=CDS   gene model=Glyma07g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACCAAGACTGTTAAGACAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACATTAACTCAAGCCTGGGCTACGGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA

Predicted protein sequences of Glyma07g01000

Limit To All Plant Sequences

>Glyma07g01000.1   sequence type=predicted peptide   gene model=Glyma07g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQVMQLCFDLVCVWEAIEPNATYFMKATA*

>Glyma07g01000.2   sequence type=predicted peptide   gene model=Glyma07g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK*

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