Glyma07g00930 - SoyBase

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Report for Sequence Feature Glyma07g00930

Feature Type:	gene_model
Chromosome:	Gm07
Start:	531283
stop:	535666
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g00930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72740	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like/winged-helix DNA-binding family protein \| chr1:27380499-27382687 REVERSE LENGTH=281	SoyBase	E_val: 8.00E-77	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR21717	Panther	TELOMERIC REPEAT BINDING PROTEIN	JGI		ISS
PTHR21717:SF9	Panther	TELOMERIC REPEAT BINDING PROTEIN 1	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF00538	PFAM	linker histone H1 and H5 family	JGI		ISS
UniRef100_I1KG92	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KG92_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJH2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB91 (Fragment) n=1 Tax=Glycine max RepID=Q0PJH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g00930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g00930

Paralog	Evidence	Comments
Glyma08g20270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g00930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g007200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g00930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g00930

Limit To All Plant Sequences

>Glyma07g00930.2   sequence type=transcript   gene model=Glyma07g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAATCACACGACAAGTGTTGGGAAATGGCAATGCAATAAAATTCAATTTAATAAAACGTATATATACAAGGGAGTTAGTAACTGAGTGATGAAGAATATCTGAAACTGAAAGCGAAGAAAGAAACAGAGTTAGAGAATTGAATGTGAATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCTCTCATAGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAAGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCCTAAAGCCTTCTCTGCTCCTCCTGCTACTACCGCCACCACCGCCACTCCTCAGAACGCTTCTCCTGCTCCTCAAAGCGCATCGTCTGATGCTGCTGTTGCCCCTGACGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCATTGATTTTTGAAGCTCTATCAGCACTGAAAGATAGTAATGGATCCGACATGAATGCCATTATTAAATTCATGGAGGTACCAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAGTCACCTTCACCAAAAGCAAAGGATGTCCGGCCTCCACAACCACAACGGCAATCTCCAGCTTCTCTCTTTATGACTAATGACACATTAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCGAAGTAAGGTCTATAAATAGATTCGTTCTGATGTTGGTTTCTAAATGTAAAATTTTGTTGATCCAATGAAATACTATTTTTACATATTTTTTTGTATTTTATCAGATTCCTTTAACATTTTTATTCCTTAAAAGTGCATGGAAAGTCATGTTTATAGTAATATCATCGGTCCACCAAATCTTTCCGGATTTCGGATCCAAAGTGTAAGCAATAGAAACTCATTTGTGTTTTTTGGCGATGTAATATAGATCATTCATGTGTCTTGAGTCTTGACTCTAGTCTAGAACTCGATCCTTCCTATCCAATTCTTTTAATTAAAAGTGAAATCTTAACGTAACTGAGGGC

Coding sequences of Glyma07g00930

Limit To All Plant Sequences

>Glyma07g00930.1   sequence type=CDS   gene model=Glyma07g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCTCTCATAGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAAGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCCTAAAGCCTTCTCTGCTCCTCCTGCTACTACCGCCACCACCGCCACTCCTCAGAACGCTTCTCCTGCTCCTCAAAGCGCATCGTCTGATGCTGCTGTTGCCCCTGACGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCATTGATTTTTGAAGCTCTATCAGCACTGAAAGATAGTAATGGATCCGACATGAATGCCATTATTAAATTCATGGAGCAAAAAAATCATCAGGTAAACCAAAATTTTAAAAGGGCATTAAGTACACGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACCAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAGTCACCTTCACCAAAAGCAAAGGATGTCCGGCCTCCACAACCACAACGGCAATCTCCAGCTTCTCTCTTTATGACTAATGACACATTAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA

>Glyma07g00930.2   sequence type=CDS   gene model=Glyma07g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCTCTCATAGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAAGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCCTAAAGCCTTCTCTGCTCCTCCTGCTACTACCGCCACCACCGCCACTCCTCAGAACGCTTCTCCTGCTCCTCAAAGCGCATCGTCTGATGCTGCTGTTGCCCCTGACGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCATTGATTTTTGAAGCTCTATCAGCACTGAAAGATAGTAATGGATCCGACATGAATGCCATTATTAAATTCATGGAGGTACCAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAGTCACCTTCACCAAAAGCAAAGGATGTCCGGCCTCCACAACCACAACGGCAATCTCCAGCTTCTCTCTTTATGACTAATGACACATTAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA

Predicted protein sequences of Glyma07g00930

Limit To All Plant Sequences

>Glyma07g00930.1   sequence type=predicted peptide   gene model=Glyma07g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKPKAFSAPPATTATTATPQNASPAPQSASSDAAVAPDASQNDQDAKNPPRYNALIFEALSALKDSNGSDMNAIIKFMEQKNHQVNQNFKRALSTRLRRLVSQGKLEKVPNGYKVKKEASSGTKSPSPKAKDVRPPQPQRQSPASLFMTNDTLKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*

>Glyma07g00930.2   sequence type=predicted peptide   gene model=Glyma07g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKPKAFSAPPATTATTATPQNASPAPQSASSDAAVAPDASQNDQDAKNPPRYNALIFEALSALKDSNGSDMNAIIKFMEVPNGYKVKKEASSGTKSPSPKAKDVRPPQPQRQSPASLFMTNDTLKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*

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