Glyma07g00450 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g00450): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g00450): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g00450

Feature Type:	gene_model
Chromosome:	Gm07
Start:	197717
stop:	199680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g00450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16810	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr1:5756150-5756694 FORWARD LENGTH=144	SoyBase	E_val: 1.00E-45	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3410	KOG	Conserved alpha-helical protein	JGI		ISS
PTHR13282	Panther	UNCHARACTERIZED	JGI		ISS
PF08555	PFAM	Eukaryotic family of unknown function (DUF1754)	JGI		ISS
UniRef100_B9RHV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 7-dehydrocholesterol reductase, putative n=1 Tax=Ricinus communis RepID=B9RHV1_RICCO	SoyBase	E_val: 9.00E-50	ISS
UniRef100_I1KG37	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KG37_SOYBN	SoyBase	E_val: 5.00E-93	ISS

Expression Patterns of Glyma07g00450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g00450 not represented in the dataset	Glyma07g00450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g00450

Paralog	Evidence	Comments
Glyma08g23980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g00450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g002500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g00450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g00450

Limit To All Plant Sequences

>Glyma07g00450.5   sequence type=transcript   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCGAGATATGTAACTCTAATATATGCCCGAGATATGCATCCATTCAATAATAACACGATAAGATAAATTGTTTCTCTTCTCTGCAAAAAGGCGTGTCGTATAGAAAAAAACATTTTGTTTTTGGAAAAAAGGTATAAGATGAATGAAATCGAATTGAGCCCTAAAAATCACTGGTACGACGCGGAGAGTTTGAGTTTCACCCTTTGATTGAAGGTTTCGGTGCTCGATCGACGTTCATAAACTGTTTTAGTCCTTTTGACGCACATTCACAAGTTAGGGTTTTTGTTAGTACCATCTGCCCCACCAGTCATTTCGTGCTTTACCAGTTATCTTATCTGGGAATATCTGCTATGCCATTCTAGGATTAAGAATATAAAAAAAAATTGTTGACAGAGATGTCAGCGTATGACAATGTTGTTGGTGGGAAATTGAAGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTTTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAGTAAAGAACAAGCCAAAGATTCAAATGATGAAGATATAAATGATGTGAGTGAATTAAGCGGGGAAGGGAAGACAGCTCATTATGATGATCATCTTACACCGGTGGAGAGGCGTTACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATATCTAATAAATCTCACCGTGACAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGATTCAATGAAGGCCAATCCTTATCATTTGTATTTGTTCGTTAATATTAATGCCGTGTGCCCGCACAATGGTTATTGTCACTGCATATTGATACTTTGTTTTGGATTCATATGATAGATATATTTGGTTTCTCTCCCTGTGGATGGAGAAGTATGCCTTCAACGAAATTTTGTCATTTTTTTTAATTAATTGTGCAAGAAA

>Glyma07g00450.6   sequence type=transcript   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCGAGATATGTAACTCTAATATATGCCCGAGATATGCATCCATTCAATAATAACACGATAAGATAAATTGTTTCTCTTCTCTGCAAAAAGGCGTGTCGTATAGAAAAAAACATTTTGTTTTTGGAAAAAAGGTATAAGATGAATGAAATCGAATTGAGCCCTAAAAATCACTGGTACGACGCGGAGAGTTTGAGTTTCACCCTTTGATTGAAGGTTTCGGTGCTCGAGATGTCAGCGTATGACAATGTTGTTGGTGGGAAATTGAAGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTTTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAGTAAAGAACAAGCCAAAGATTCAAATGATGAAGATATAAATGATGTGAGTGAATTAAGCGGGGAAGGGAAGACAGCTCATTATGATGATCATCTTACACCGGTGGAGAGGCGTTACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATATCTAATAAATCTCACCGTGACAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGATTCAATGAAGGCCAATCCTTATCATTTGTATTTGTTCGTTAATATTAATGCCGTGTGCCCGCACAATGGTTATTGTCACTGCATATTGATACTTTGTTTTGGATTCATATGATAGATATATTTGGTTTCTCTCCCTGTGGATGGAGAAGTATGCCTTCAACGAAATTTTGTCATTTTTTTTAATTAATTGTGCAAGAAA

Coding sequences of Glyma07g00450

Limit To All Plant Sequences

>Glyma07g00450.4   sequence type=CDS   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCGTATGACAATGTTGTTGGTGGGAAATTGAAGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTTTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAGTAAAGAACAAGCCAAAGATTCAAATGATGAAGATATAAATGATGTGAGTGAATTAAGCGGGGAAGGGAAGACAGCTCATTATGATGATCATCTTACACCGGTGGAGAGGCGTTACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATATCTAATAAATCTCACCGTGACAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA

>Glyma07g00450.5   sequence type=CDS   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCGTATGACAATGTTGTTGGTGGGAAATTGAAGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTTTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAGTAAAGAACAAGCCAAAGATTCAAATGATGAAGATATAAATGATGTGAGTGAATTAAGCGGGGAAGGGAAGACAGCTCATTATGATGATCATCTTACACCGGTGGAGAGGCGTTACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATATCTAATAAATCTCACCGTGACAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA

>Glyma07g00450.6   sequence type=CDS   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCGTATGACAATGTTGTTGGTGGGAAATTGAAGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTTTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAGTAAAGAACAAGCCAAAGATTCAAATGATGAAGATATAAATGATGTGAGTGAATTAAGCGGGGAAGGGAAGACAGCTCATTATGATGATCATCTTACACCGGTGGAGAGGCGTTACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATATCTAATAAATCTCACCGTGACAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA

Predicted protein sequences of Glyma07g00450

Limit To All Plant Sequences

>Glyma07g00450.4   sequence type=predicted peptide   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAYDNVVGGKLKLKGKALDVAGGVKKKKKKNKRNQEQLLQVAEDEVSAGGSKEQAKDSNDEDINDVSELSGEGKTAHYDDHLTPVERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*

>Glyma07g00450.5   sequence type=predicted peptide   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAYDNVVGGKLKLKGKALDVAGGVKKKKKKNKRNQEQLLQVAEDEVSAGGSKEQAKDSNDEDINDVSELSGEGKTAHYDDHLTPVERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*

>Glyma07g00450.6   sequence type=predicted peptide   gene model=Glyma07g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAYDNVVGGKLKLKGKALDVAGGVKKKKKKNKRNQEQLLQVAEDEVSAGGSKEQAKDSNDEDINDVSELSGEGKTAHYDDHLTPVERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain