SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20260 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1666) | chr3:7064190-7065751 REVERSE LENGTH=437 | SoyBase | E_val: 2.00E-155 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0007000 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleolus organization | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009957 | GO-bp | Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051258 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein polymerization | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| PTHR10759 | Panther | 60S RIBOSOMAL PROTEIN L34 | JGI | ISS | |
| PTHR10759:SF1 | Panther | 60S RIBOSOMAL PROTEIN L34 | JGI | ISS | |
| PF07891 | PFAM | Protein of unknown function (DUF1666) | JGI | ISS | |
| UniRef100_I1KG31 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KG31_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LTR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF36750.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LTR6_ARATH | SoyBase | E_val: 4.00E-116 | ISS |
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Glyma07g00400 not represented in the dataset |
Glyma07g00400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g24050 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g002000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g00400.4 sequence type=transcript gene model=Glyma07g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCATTTACTACATTTAAGATTAATGCAAAACAAAACTCAGATTTATTATTTCTATTTCTATTTATTTATGCTTATTCTGTCAGTTCTGAGTTAAATTTTATTGGGAAATGAGTTGAGTTGAGAGAATCAATCAAACAAAACAAAACACAGTGCTCAGTGCCCTTTCTCACATTTATTTTGCTCTAGGGTTTCACTTCTGCCTTCCCTCACAGTCACATTGTTCTTCCCAACTCCTCAGAAGTTGAATGTAGTTTGGTGATACGGAGAGAGGTTGCCCTGTCCTGTCGGTGGCTCTGATCTATGTAAATGCTCAATGCCCTCCTTGTTTTCTGCGGTTCCATCTTGGATTTTTGGTATGACATTTCCACGATGCTATATGCTTGCTTCGCCATTTCATCACTAGTGTCTTCTTGTCTTGGAAGTTGCTATGGAATCTAGGGGTTCAACAAGCTAAATAAAAGGTTCTTTTCTTCCGTATAAATTTTCCTGCGCTTTGTTACCGATTGTCACAAAAACTAACTGCTATTACTTGGGTCTGTTATTCAGTAGTATTCTCATTCTCTTTTGATGTGATTATTAAGGGTTTTGACCTAAACATTTTAAGTATCGGGCTGATTGTAGAATAGTTTGTTTCTGAAAGTAAGGTGATAAAGCATGGAGTTTTTGAAAATCAAGAAGTTCAGAAAATCTCAGAAAGCAGATGGAGAAAAGGATTTGGCAGACAAGGCAGTGCCTGAGCCTGAGGAACCAAAGCTGAACACCGACTGTCCTGATCAGTGTAAATCAGAAAACGCAGATTCTGCAGGTGAAGCTGAGGATGATGATGATTTTATTACTAATGAGGTTAAGAGGAGGCTGAAAGAATTGAGAAGAAACAGTTTTATGGTGTTGATTCCTGAAGAAGATTCCTGCCCGGAGGAAGGGGAGGAGGAAGAGGAAGAGGGAGAGACGAGCTCAAATGAATGGAGGGATGTGGAGGCAGAAGGTCAGCAATGGTGGCGTGGTTTTGATGCTGTGTTTGAAAAGTACTGTGAAAGAATGTTATTCTTTGATCGGATGGGCACTCAACAGCTTAGTGAAGTTGGCAAAGGTTCACAGTATACTTCAACTCCATCTCCAAGATCTGCTTCAAAGAAGCTGGTTTCTCCCCTTCGTTGTCTTTCCTTGAAAAAATTTGAAGAACCTGATGATGAGACTGAACATCTTCAACAGCCTGAGCATGACCCCTACCTGGATATTGAAACAGCATATGTAGGTCAAATTTGCTTGACTTGGGAGGCACTTCATTGTCAGTACTCTCATATGAGTCAGAAGATATCTTGGCAACATGATAATCCTACCTGTTACAACCACAGTGCACAAGAGTTTCAACAGTTCCAGGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGCAGGGCCGTCGAGCTGAAATTTATGCTCGCACAAGGAACAATTTGCCTAAACTGCTTCAGATTCCTAATATACGAGGTTCAGATCATGAATTGACTGATGATTCAGAGACGAGAGTTCTTGCTCCTGATCTTATCAGGATAATTGAAAGTTCTATCCTTACATTCCACCTTTTCATGAAAAGGGACAAGAAAAAGTCAAGTGGTGCCACCAGTCAGAACCAGCTTGCAACTCCTCTACAACAGATTCAGTCGACTCTTGAAAAGAAAGTGGCGAAGCTGAAGGAACTGCGCAGAAAGAAAAAAAGTTGGAAGAAGAATTCTTGGCCCCAAAAGCATGAGGACATTCATCTTTTGCTTGGCCTTATTGACGTGAAAATCCTGGCAAGGGTTCTGAGGATGACGAGGATGACTAGAGAGCAACTGTTTTGGTGTGAAGAAAAGATGAAAAAACTGGATTTATCAAATAGTAGGTTAGAAAGGGATCCATGTCCCATCCTCTTCCCTTGCTAGGGATCAGTGTTGTATATCTGATAGATAGCTGCTAATTATGTAGCATCAACTTTAGTTCTTTGTCCTTGGGGGTCGATAATTGTTGCTAATACAACTGCTGGTTTTGAAGACGTCATCAAATGGGCTTCTAGTATCATCGCCCTACAGCTGTTTAGTTTTCTTGGGGAAGAATTCGGGCTGCTGTATGACAATGAGAGGACAAGAATGTTTTTCTGTTATCTAAAATGTATTCTTGTTCTGTCAAAATTGTGAGTTTCCAAGTTGCTTTGTGAAACCTCCAATATAACATTGTTGTCGCGAATTATTCTTGTTGGTTCCTAGACTCGATCTAATGTTTACATCAATGCATCTTATTTGTCTTAAATGCTTTGATACTAAGATAAAT
>Glyma07g00400.3 sequence type=CDS gene model=Glyma07g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTTTGAAAATCAAGAAGTTCAGAAAATCTCAGAAAGCAGATGGAGAAAAGGATTTGGCAGACAAGGCAGTGCCTGAGCCTGAGGAACCAAAGCTGAACACCGACTGTCCTGATCAGTGTAAATCAGAAAACGCAGATTCTGCAGGTGAAGCTGAGGATGATGATGATTTTATTACTAATGAGGTTAAGAGGAGGCTGAAAGAATTGAGAAGAAACAGTTTTATGGTGTTGATTCCTGAAGAAGATTCCTGCCCGGAGGAAGGGGAGGAGGAAGAGGAAGAGGGAGAGACGAGCTCAAATGAATGGAGGGATGTGGAGGCAGAAGGTCAGCAATGGTGGCGTGGTTTTGATGCTGTGTTTGAAAAGTACTGTGAAAGAATGTTATTCTTTGATCGGATGGGCACTCAACAGCTTAGTGAAGTTGGCAAAGGTTCACAGTATACTTCAACTCCATCTCCAAGATCTGCTTCAAAGAAGCTGGTTTCTCCCCTTCGTTGTCTTTCCTTGAAAAAATTTGAAGAACCTGATGATGAGACTGAACATCTTCAACAGCCTGAGCATGACCCCTACCTGGATATTGAAACAGCATATGTAGGTCAAATTTGCTTGACTTGGGAGGCACTTCATTGTCAGTACTCTCATATGAGTCAGAAGATATCTTGGCAACATGATAATCCTACCTGTTACAACCACAGTGCACAAGAGTTTCAACAGTTCCAGGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGCAGGGCCGTCGAGCTGAAATTTATGCTCGCACAAGGAACAATTTGCCTAAACTGCTTCAGATTCCTAATATACGAGGTTCAGATCATGAATTGACTGATGATTCAGAGACGAGAGTTCTTGCTCCTGATCTTATCAGGATAATTGAAAGTTCTATCCTTACATTCCACCTTTTCATGAAAAGGGACAAGAAAAAGTCAAGTGGTGCCACCAGTCAGAACCAGCTTGCAACTCCTCTACAACAGATTCAGTCGACTCTTGAAAAGAAAGTGGCGAAGCTGAAGGAACTGCGCAGAAAGAAAAAAAGTTGGAAGAAGAATTCTTGGCCCCAAAAGCATGAGGACATTCATCTTTTGCTTGGCCTTATTGACGTGAAAATCCTGGCAAGGGTTCTGAGGATGACGAGGATGACTAGAGAGCAACTGTTTTGGTGTGAAGAAAAGATGAAAAAACTGGATTTATCAAATAGTAGGTTAGAAAGGGATCCATGTCCCATCCTCTTCCCTTGCTAG >Glyma07g00400.4 sequence type=CDS gene model=Glyma07g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTTTGAAAATCAAGAAGTTCAGAAAATCTCAGAAAGCAGATGGAGAAAAGGATTTGGCAGACAAGGCAGTGCCTGAGCCTGAGGAACCAAAGCTGAACACCGACTGTCCTGATCAGTGTAAATCAGAAAACGCAGATTCTGCAGGTGAAGCTGAGGATGATGATGATTTTATTACTAATGAGGTTAAGAGGAGGCTGAAAGAATTGAGAAGAAACAGTTTTATGGTGTTGATTCCTGAAGAAGATTCCTGCCCGGAGGAAGGGGAGGAGGAAGAGGAAGAGGGAGAGACGAGCTCAAATGAATGGAGGGATGTGGAGGCAGAAGGTCAGCAATGGTGGCGTGGTTTTGATGCTGTGTTTGAAAAGTACTGTGAAAGAATGTTATTCTTTGATCGGATGGGCACTCAACAGCTTAGTGAAGTTGGCAAAGGTTCACAGTATACTTCAACTCCATCTCCAAGATCTGCTTCAAAGAAGCTGGTTTCTCCCCTTCGTTGTCTTTCCTTGAAAAAATTTGAAGAACCTGATGATGAGACTGAACATCTTCAACAGCCTGAGCATGACCCCTACCTGGATATTGAAACAGCATATGTAGGTCAAATTTGCTTGACTTGGGAGGCACTTCATTGTCAGTACTCTCATATGAGTCAGAAGATATCTTGGCAACATGATAATCCTACCTGTTACAACCACAGTGCACAAGAGTTTCAACAGTTCCAGGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGCAGGGCCGTCGAGCTGAAATTTATGCTCGCACAAGGAACAATTTGCCTAAACTGCTTCAGATTCCTAATATACGAGGTTCAGATCATGAATTGACTGATGATTCAGAGACGAGAGTTCTTGCTCCTGATCTTATCAGGATAATTGAAAGTTCTATCCTTACATTCCACCTTTTCATGAAAAGGGACAAGAAAAAGTCAAGTGGTGCCACCAGTCAGAACCAGCTTGCAACTCCTCTACAACAGATTCAGTCGACTCTTGAAAAGAAAGTGGCGAAGCTGAAGGAACTGCGCAGAAAGAAAAAAAGTTGGAAGAAGAATTCTTGGCCCCAAAAGCATGAGGACATTCATCTTTTGCTTGGCCTTATTGACGTGAAAATCCTGGCAAGGGTTCTGAGGATGACGAGGATGACTAGAGAGCAACTGTTTTGGTGTGAAGAAAAGATGAAAAAACTGGATTTATCAAATAGTAGGTTAGAAAGGGATCCATGTCCCATCCTCTTCCCTTGCTAG
>Glyma07g00400.3 sequence type=predicted peptide gene model=Glyma07g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFLKIKKFRKSQKADGEKDLADKAVPEPEEPKLNTDCPDQCKSENADSAGEAEDDDDFITNEVKRRLKELRRNSFMVLIPEEDSCPEEGEEEEEEGETSSNEWRDVEAEGQQWWRGFDAVFEKYCERMLFFDRMGTQQLSEVGKGSQYTSTPSPRSASKKLVSPLRCLSLKKFEEPDDETEHLQQPEHDPYLDIETAYVGQICLTWEALHCQYSHMSQKISWQHDNPTCYNHSAQEFQQFQVLLQRFIENEPFEQGRRAEIYARTRNNLPKLLQIPNIRGSDHELTDDSETRVLAPDLIRIIESSILTFHLFMKRDKKKSSGATSQNQLATPLQQIQSTLEKKVAKLKELRRKKKSWKKNSWPQKHEDIHLLLGLIDVKILARVLRMTRMTREQLFWCEEKMKKLDLSNSRLERDPCPILFPC* >Glyma07g00400.4 sequence type=predicted peptide gene model=Glyma07g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFLKIKKFRKSQKADGEKDLADKAVPEPEEPKLNTDCPDQCKSENADSAGEAEDDDDFITNEVKRRLKELRRNSFMVLIPEEDSCPEEGEEEEEEGETSSNEWRDVEAEGQQWWRGFDAVFEKYCERMLFFDRMGTQQLSEVGKGSQYTSTPSPRSASKKLVSPLRCLSLKKFEEPDDETEHLQQPEHDPYLDIETAYVGQICLTWEALHCQYSHMSQKISWQHDNPTCYNHSAQEFQQFQVLLQRFIENEPFEQGRRAEIYARTRNNLPKLLQIPNIRGSDHELTDDSETRVLAPDLIRIIESSILTFHLFMKRDKKKSSGATSQNQLATPLQQIQSTLEKKVAKLKELRRKKKSWKKNSWPQKHEDIHLLLGLIDVKILARVLRMTRMTREQLFWCEEKMKKLDLSNSRLERDPCPILFPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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