SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g00391): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g00391): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g00391

Feature Type:gene_model
Chromosome:Gm07
Start:174184
stop:175463
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78895AT Annotation by Michelle Graham. TAIR10: Reticulon family protein | chr1:29658313-29659866 REVERSE LENGTH=164 SoyBaseE_val: 2.00E-71ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
PF02453PFAM Reticulon JGI ISS
UniRef100_Q8GWH5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B22 n=1 Tax=Arabidopsis thaliana RepID=RTNLT_ARATH SoyBaseE_val: 8.00E-69ISS
UniRef100_UPI0002338502UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338502 related cluster n=1 Tax=unknown RepID=UPI0002338502 SoyBaseE_val: 4.00E-121ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g00391 not represented in the dataset

Glyma07g00391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g24061 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g001900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g00391.2   sequence type=transcript   gene model=Glyma07g00391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGTCTTATTGTAGCTGTTTGGTTATAAAATTGAAAAAAAAAGACGGGAAAATAGAATGGACGCAGATAGTGATTGAGAATTGGGAATTGCGATGGATGGGAGAAACGGAAGCGGAAGCAGGAGGAGTGGGGAAGCAGGAGGAATGGGGAAGGCGATAATCGCGTTGGTAATTGGGAGTCTTGTGTACTATCACTGTGCCTACCGCAATTCTACCCTTGTCTCTCTTTTTTCCGATGTCTTCATCGTCCTTCTCTGCTCCCTCGCCATTCTCGGTCTTCTATTCCGACAAATGGGCATCCAGGTTCCTGTTGATCCCCTTGAGTGGCAAATATCTCAGGAGAGTGCGAACGCGATCGTGGCATGGTTGGCCAATACGATTGGTGGCGCCGAGTCAGTGTTCAGGGTGGCGGCTACTGGGCACGACAAGAGGCTGTTTCTGAAGGTCATTCTTTCCCTATATCTCTTCTCTGCTCTTGGAAGACTCGCCAGAGGGATTACAGTTGCCTATGCCGGTACGCTACGCTTTCAATTTCTTAAATAGAAAATACTTGGATTTGATTTTTAATAGAAACGCCTTTGCAGGACTATGCTTGTTTTGTCTTTACATCTTTGCCGAGTGCTCTCAATCAATTACCTTCTTCGGGAGAACTACTGAAACTGAAGAACAAGACACCATCATCTAATTGTAACATAACTACTCATTTTCGCTATTGTATGTCTTCCCCGTCAAGAATAAATCATCTTTGCTGCACTATTCTTTTCAGGTAAGCCTTTACTTTCCAACGATCAAACTAAGCATTTTATGATAAAAAATAAAATACTGCTTGTATTTCCGATGACTAAATCAAACACCTTCTATTTCAAGGATGGTTCACGCTCAAAGCTCTTCAAAACTAGAACATCCTTTATATTCACACTATAATTACGATAATTACAACAAACCGAAGTAGCTCACAAATTAGGATTGAAGCCGAATGCTTATATTAATACAACAGAAAACAAAAGTTAAACCACCTATGTTTATTGTAATAGACTACAGACTAGAGGCAACAAGTTACATATAGTATATTGATAGACTTTATACGTTTTGAAGATTGATAAAATTACTATTTTTGGGGTCATCATCATATCTACCAAAAAACCTTAATGATCACTTTTTAATGTTACATATAGTTTCCTTTTTCAATCATATTTTTTTCATTTACA

>Glyma07g00391.1   sequence type=CDS   gene model=Glyma07g00391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGAGAAACGGAAGCGGAAGCAGGAGGAGTGGGGAAGCAGGAGGAATGGGGAAGGCGATAATCGCGTTGGTAATTGGGAGTCTTGTGTACTATCACTGTGCCTACCGCAATTCTACCCTTGTCTCTCTTTTTTCCGATGTCTTCATCGTCCTTCTCTGCTCCCTCGCCATTCTCGGTCTTCTATTCCGACAAATGGGCATCCAGGTTCCTGTTGATCCCCTTGAGTGGCAAATATCTCAGGAGAGTGCGAACGCGATCGTGGCATGGTTGGCCAATACGATTGGTGGCGCCGAGTCAGTGTTCAGGGTGGCGGCTACTGGGCACGACAAGAGGCTGTTTCTGAAGGTCATTCTTTCCCTATATCTCTTCTCTGCTCTTGGAAGACTCGCCAGAGGGATTACAGTTGCCTATGCCGGACTATGCTTGTTTTGTCTTTACATCTTTGCCGAGTGCTCTCAATCAATTACCTTCTTCGGGAGAACTACTGAAACTGAAGAACAAGACACCATCATCTAA

>Glyma07g00391.2   sequence type=CDS   gene model=Glyma07g00391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGAGAAACGGAAGCGGAAGCAGGAGGAGTGGGGAAGCAGGAGGAATGGGGAAGGCGATAATCGCGTTGGTAATTGGGAGTCTTGTGTACTATCACTGTGCCTACCGCAATTCTACCCTTGTCTCTCTTTTTTCCGATGTCTTCATCGTCCTTCTCTGCTCCCTCGCCATTCTCGGTCTTCTATTCCGACAAATGGGCATCCAGGTTCCTGTTGATCCCCTTGAGTGGCAAATATCTCAGGAGAGTGCGAACGCGATCGTGGCATGGTTGGCCAATACGATTGGTGGCGCCGAGTCAGTGTTCAGGGTGGCGGCTACTGGGCACGACAAGAGGCTGTTTCTGAAGGTCATTCTTTCCCTATATCTCTTCTCTGCTCTTGGAAGACTCGCCAGAGGGATTACAGTTGCCTATGCCGGTACGCTACGCTTTCAATTTCTTAAATAG

>Glyma07g00391.1   sequence type=predicted peptide   gene model=Glyma07g00391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGRNGSGSRRSGEAGGMGKAIIALVIGSLVYYHCAYRNSTLVSLFSDVFIVLLCSLAILGLLFRQMGIQVPVDPLEWQISQESANAIVAWLANTIGGAESVFRVAATGHDKRLFLKVILSLYLFSALGRLARGITVAYAGLCLFCLYIFAECSQSITFFGRTTETEEQDTII*

>Glyma07g00391.2   sequence type=predicted peptide   gene model=Glyma07g00391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGRNGSGSRRSGEAGGMGKAIIALVIGSLVYYHCAYRNSTLVSLFSDVFIVLLCSLAILGLLFRQMGIQVPVDPLEWQISQESANAIVAWLANTIGGAESVFRVAATGHDKRLFLKVILSLYLFSALGRLARGITVAYAGTLRFQFLK*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo