Glyma07g00330 - SoyBase

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Report for Sequence Feature Glyma07g00330

Feature Type:	gene_model
Chromosome:	Gm07
Start:	127805
stop:	136578
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g00330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78950	AT	Annotation by Michelle Graham. TAIR10: Terpenoid cyclases family protein \| chr1:29684558-29688673 REVERSE LENGTH=759	SoyBase	E_val: 0	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016866	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity	SoyBase	N/A	ISS
GO:0042300	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-amyrin synthase activity	SoyBase	N/A	ISS
KOG0497	KOG	Oxidosqualene-lanosterol cyclase and related proteins	JGI		ISS
PTHR11764	Panther	SQUALENE CYCLASES-RELATED	JGI		ISS
PTHR11764:SF3	Panther	CYCLOARTENOL SYNTHASE-RELATED	JGI		ISS
PF00432	PFAM	Prenyltransferase and squalene oxidase repeat	JGI		ISS
UniRef100_I1KVV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KVV5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9MB42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-amyrin synthase n=1 Tax=Glycyrrhiza glabra RepID=BAMS_GLYGL	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g00330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g00330

Paralog	Evidence	Comments
Glyma08g24160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g00330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g001300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g00330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g00330

Limit To All Plant Sequences

>Glyma07g00330.1   sequence type=CDS   gene model=Glyma07g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAGGCTGAAGATAGCAGATGGAGGAAATGATCCATACATATTCAGCACAAACAATTTCGTTGGGAGGCAGACATGGGAGTTTGATCCTGAAGCAGGCAGTCCAGAGGAACGGGCCCAGGTTGAAGCAGCTCGTCAGCATTTCTACCACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAAGATGGAGAGGAAATCACATACCAAAAAGTCACAAGCGCCGTCAGAAGGGGCGCACACCACCTTGCGGCACTGCAGACCTCTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTTGTACTGCACTGAACTATATATGCATGCGAATGCTTGGAGAAGGACCTAATGGAGGTCATGACAATGCTTGTGCTAGAGCAAGAAAGTGGATTCGAGATCATGGTGGTGTAACACATATACCTTCATGGGGAAAAACTTGGCTTTCGATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGCTAAGATGTGGTGTTACTGTCGATTGGTATACATGCCTATGTCTTACTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTAAGAGAAGAGTTGTTTACTCAACCTTATGAAAAAGTTAATTGGAAGAAAGCGCGTCACCAATGTGCAAAGGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGTTGATTAGAGAAAAGGCCCTTCAAGTAACTATGAAACATATTCATTATGAAGATGAGACTAGTCGATACATAACCATTGGTTGTGTGGAAAAGGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATGGAATGACCATGCAGAGTTTTGGTAGCCAAGAATGGGATGCTGGCTTTGCTGTTCAAGCTTTGCTTGCCACTAACATAATTGAAGAAATTGGTCCTACGTTTGCAAAAGGACATGATTTCATCAAGAAGTCTCAGGTGAAGGATAATCCTTTTGGAGATTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGATTATACGATTCAGTCAATGTCTTGTTGTCGCTTCAGAGTAAAAAAGGTGGTTTAGCAGCATGGGAGCCTGCAGGAGCTCAAGAGTGGTTAGAATTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAAGCTATATCCAGGACATAGGAAGAAAGAGATAGAAAATTTCATTACCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCATGGTATGGAAATTGGGGAGTTTGCTTCACTTATGGCTCTTGGTTTGCACTTGGAGGTCTAGCAGCTGCTGGTAAGACTTACACCAATTGTGCTGCCATTCGCAAAGCCGTTAAATTTCTACTTACAACACAAAGAGAGGACGGTGGATGGGGAGAGAGTTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTAGAAGGAAGCCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGACTAATTCATGCTGGACAGGCGGATAGAGACCCCATGCCTCTTCACCGTGCTGCAAAGTTGCTCATTAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAACAGGAAATCACGGGAGTATTCATGAAAAATTGCATGTTGCATTATCCAATGTACAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATCGAAGGCGGGTTCCATTGCCTTCCACTGAAGTTTAA

Predicted protein sequences of Glyma07g00330

Limit To All Plant Sequences

>Glyma07g00330.1   sequence type=predicted peptide   gene model=Glyma07g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRLKIADGGNDPYIFSTNNFVGRQTWEFDPEAGSPEERAQVEAARQHFYHNRFKVKPCADLLWRFQVLRENNFKQTIPRVTIEDGEEITYQKVTSAVRRGAHHLAALQTSDGHWPAQIAGPLFFLPPLVFCMYITGNLESVFPEEHRKEILRYTYYHQNEDGGWGLHIEGHSTMFCTALNYICMRMLGEGPNGGHDNACARARKWIRDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQCAKEDLYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLIREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMTMQSFGSQEWDAGFAVQALLATNIIEEIGPTFAKGHDFIKKSQVKDNPFGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLLSLQSKKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFITNAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKAVKFLLTTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQADRDPMPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTEV*

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