Glyma07g00220 - SoyBase

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Report for Sequence Feature Glyma07g00220

Feature Type:	gene_model
Chromosome:	Gm07
Start:	28569
stop:	33492
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g00220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53390	AT	Annotation by Michelle Graham. TAIR10: O-acyltransferase (WSD1-like) family protein \| chr5:21656951-21659207 REVERSE LENGTH=486	SoyBase	E_val: 1.00E-81	ISS
GO:0048446	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity	SoyBase	N/A	ISS
PF03007	PFAM	Uncharacterised protein family (UPF0089)	JGI		ISS
PF06974	PFAM	Protein of unknown function (DUF1298)	JGI		ISS
UniRef100_G7ZVB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-acyltransferase WSD1 n=2 Tax=Medicago truncatula RepID=G7ZVB3_MEDTR	SoyBase	E_val: 6.00E-176	ISS
UniRef100_I1KG13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KG13_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g00220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g00220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g000300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g00220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g00220

Limit To All Plant Sequences

>Glyma07g00220.1   sequence type=CDS   gene model=Glyma07g00220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAGAGGGGGGACGAAGCTGTAACCCCGGCGGGGAGGCTGTTCCTGCAGGCAGAAATGAAACAAGTAATCCACTGCGTCATAGGGCTGAAGAACCCCATCGACGCGGAGCTAGTGAAATCACAAGTCCGGAACTCTACTATGCTACAACACCCACGCTTCACGAGTCTGATGGTAAGAGGCGAAGGAGGAGTGGAGCACTGGCGGCCCACCGAAATCGACATCGATCGGCACGTGCTTATAATAGAGGAAGCAGTGGGCGAGAGGGAGGAGGAGGATGAATCGGCCATCAACAAGTACCTGGCCGAATTATCCATAGACAGCGATGGGCTTAGCATGGAGAAGCCCCTGTGGGAAATCCATCTTCTTAAGGCCCACAAGTGCGTTATTTTCCGAATCCATCACGCCCTCGGGGATGGGATTTCCTTGATGTCCATGCTTCTCGCCAGCTGCAGGAAACTCAACAACCCAAACGCCCTCCCTACCATCGCCGCCTCTGCCTCTACCTCTGCCTCTACCTCTGCCTCTAAAACTAACCTCATCAATTTCCGGAATCTCCTCGCTACCCTCTGGTTTTGTTTCATCTTTGCCCTCGAGTTCATCCTCAGGTGTTTGTGGATTCGTGACCCCAAATCCGCCTTAACCGGTGGCGCTGGGGTTGAGCTCTGGCCCAGGAAGATAGCTACTGCCACTTTCTCCTTAGAAGACATGAAGACCGTCAAGACTGCTGCTAATGCGACCATAAATGATGTTCTATTTGCAGTTATATCATCTGGGATATCAAGATACCTAGACTTTCGAGCACCTAATGGGCTGCGAGATGGTGTTCAGCTAACAGGTTTAGCTATGGTTAATTTAAGAAAGCATCCAGGATTACAGGAATTATCCAATATGATGAGAAGTAATTCAGGAGCAAGGTGGGGTAACAAATTTGGTATGATTCTCTTGCCTATATATTACCATAGAACCAACACTTCAGATCCTTTAGAATATCTGAAGAGAGCTAAGGCAATGATTGACAGAAAGAAACGATCTCTAGAAGCCAGTTTCTCATACAAAATTGGGGATTTTGTAATGTCCACCCTTGGTCCAAAGTTTGCTAGCCTTCTAAATTATCGGATACTCTGCCACACTTCCTTCACTATCTCAAATGTGGTTGGCCCGCAAGAGGAGATTATGATTGGAGGCAATCCTATAACGTTCTTAAGGGCAAATAATTCTGCCTTGCCTCATGCTCTCATTTTGAATATGGTGAGCTATGCTGGAAGAGCAGACATGCAAGTGCAGGTGGCCAAAGACATCATTCCTGATCCTGAGTTTCTTGCCAAGTGTTTTGAAGATGCATTGCTTGAAATGAAGGAGCAGGTTACGGCCAAAATCTGA

Predicted protein sequences of Glyma07g00220

Limit To All Plant Sequences

>Glyma07g00220.1   sequence type=predicted peptide   gene model=Glyma07g00220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGERGDEAVTPAGRLFLQAEMKQVIHCVIGLKNPIDAELVKSQVRNSTMLQHPRFTSLMVRGEGGVEHWRPTEIDIDRHVLIIEEAVGEREEEDESAINKYLAELSIDSDGLSMEKPLWEIHLLKAHKCVIFRIHHALGDGISLMSMLLASCRKLNNPNALPTIAASASTSASTSASKTNLINFRNLLATLWFCFIFALEFILRCLWIRDPKSALTGGAGVELWPRKIATATFSLEDMKTVKTAANATINDVLFAVISSGISRYLDFRAPNGLRDGVQLTGLAMVNLRKHPGLQELSNMMRSNSGARWGNKFGMILLPIYYHRTNTSDPLEYLKRAKAMIDRKKRSLEASFSYKIGDFVMSTLGPKFASLLNYRILCHTSFTISNVVGPQEEIMIGGNPITFLRANNSALPHALILNMVSYAGRADMQVQVAKDIIPDPEFLAKCFEDALLEMKEQVTAKI*

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