Glyma06g48270 - SoyBase

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Report for Sequence Feature Glyma06g48270

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50530182
stop:	50539794
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09960	AT	Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein \| chr4:6236713-6239409 REVERSE LENGTH=230	SoyBase	E_val: 1.00E-117	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0080155	GO-bp	Annotation by Michelle Graham. GO Biological Process: Regulation of double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF19	Panther	MADS BOX PROTEIN	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_B9MSS8	UniRef	Annotation by Michelle Graham. Best UniRef hit: MADS domain transporter AGL11 n=1 Tax=Glycine max RepID=B9MSS8_SOYBN	SoyBase	E_val: 2.00E-161	ISS
UniRef100_B9MSS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MADS domain transporter AGL11 n=1 Tax=Glycine max RepID=B9MSS8_SOYBN	SoyBase	E_val: 2.00E-161	ISS

Expression Patterns of Glyma06g48270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g48270 not represented in the dataset	Glyma06g48270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g48270

Paralog	Evidence	Comments
Glyma04g43640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g48270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g324400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g48270

Limit To All Plant Sequences

>Glyma06g48270.4   sequence type=transcript   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGCGCAGTTTCATTTCTTTGGATTAGAAATTTTTCCCAAAGCTGATCGAGAAGCCAGCCAGGCCAGAGTTGAAGAAGAATGGGAAGGGGGAAGATCGAAATCAAAAGGATTGAGAACACAACAAATCGGCAAGTGACCTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTGTCAGTGCTGTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTATTCCAACAACAACATAAGATCAACAATAGAGAGGTACAAAAAGGCATGTTCTGATCACTCAAGCGCGAGCACTACCACAGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCTGAAATTGAATACTTCCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTCCGAACTAAGATAACTGACGTGGAGAGGATTCAGCAAGTAAACATGGTTTCTGGGCCAGAACTGAATGCCATTCAGGCATTAGCTTCCCGTAACTTCTTCAATCCAAATATGTTGGAAGGTGGAACTGTTTACCCTCACTCAGATAAGAAGATTCTTCATCTTGGGTGATCAATAATATATGATCTTGGCTAGCCTATGGCATGTCTATCCAATTAGCCGGTGGCTAAATGCATTATTATTACTACTCTTTTGGTTGCTCATTAACTAGACCATGTGATCTATATACTACTTATGGATTATGGATACTTATGTATGATGATTGTATGATATCATAACAATCAGTTAGAAATAATAATTAAAAAATAGAGTTGTGTTTGAAGACACTAAGTTATCATTATATTAAGGCATTATATGAACCACTTGA

>Glyma06g48270.5   sequence type=transcript   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTAGCTGGTCCTTTTTTCCTTCTTCACAAACCTCTCTCTCTCTCTCTCTCATGCACTCCATATATCGTTTCAAAGATACACAAACAAAGTAAGGGCTATAAATAGGAGGGATAGAAGTGGAAGAAAGTCTATAGCGCAGTTTCATTTCTTTGGATTAGAAATTTTTCCCAAAGCTGATCGAGAAGCCAGCCAGGCCAGAAAGAGTTGAAGAAGAATGGGAAGGGGGAAGATCGAAATCAAAAGGATTGAGAACACAACAAATCGGCAAGTGACCTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTGTCAGTGCTGTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTATTCCAACAACAACATAAGATCAACAATAGAGAGGTACAAAAAGGCATGTTCTGATCACTCAAGCGCGAGCACTACCACAGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCTGAAATTGAATACTTCCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTCCGAACTAAGATAACTGACGTGGAGAGGATTCAGCAAGTAAACATGGTTTCTGGGCCAGAACTGAATGCCATTCAGGCATTAGCTTCCCGTAACTTCTTCAATCCAAATATGTTGGAAGGTGGAACTGTTTACCCTCACTCAGATAAGAAGATTCTTCATCTTGGGTGATCAATAATATATGATCTTGGCTAGCCTATGGCATGTCTATCCAATTAGCCGGTGGCTAAATGCATTATTATTACTACTCTTTTGGTTGCTCATTAACTAGACCATGTGATCTATATACTACTTATGGATTATGGATACTTATGTATGATGATTGTATGATATCATAACAATCAGTTAGAAATAATAATTAAAAAATAGAGTTGTGTTTGAAGACACTAAGTTATCATTATATTAAGGCATTATATGAACCACTTGAACATACATTTATCTAAGTAATTTTTAGGAAGTAATTTACATTTACATGACATAAAGAATTAGTATGGT

Coding sequences of Glyma06g48270

Limit To All Plant Sequences

>Glyma06g48270.2   sequence type=CDS   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGGGAAGATCGAAATCAAAAGGATTGAGAACACAACAAATCGGCAAGTGACCTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTGTCAGTGCTGTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTATTCCAACAACAACATAAGATCAACAATAGAGAGGTACAAAAAGGCATGTTCTGATCACTCAAGCGCGAGCACTACCACAGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCTGAAATTGAATACTTCCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTCCGAACTAAGATAACTGACGTGGAGAGGATTCAGCAAGTAAACATGGTTTCTGGGCCAGAACTGAATGCCATTCAGGCATTAGCTTCCCGTAACTTCTTCAATCCAAATATGTTGGAAGGTGGAACTGTTTACCCTCACTCAGATAAGAAGATTCTTCATCTTGGGTGA

>Glyma06g48270.4   sequence type=CDS   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGGGAAGATCGAAATCAAAAGGATTGAGAACACAACAAATCGGCAAGTGACCTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTGTCAGTGCTGTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTATTCCAACAACAACATAAGATCAACAATAGAGAGGTACAAAAAGGCATGTTCTGATCACTCAAGCGCGAGCACTACCACAGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCTGAAATTGAATACTTCCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTCCGAACTAAGATAACTGACGTGGAGAGGATTCAGCAAGTAAACATGGTTTCTGGGCCAGAACTGAATGCCATTCAGGCATTAGCTTCCCGTAACTTCTTCAATCCAAATATGTTGGAAGGTGGAACTGTTTACCCTCACTCAGATAAGAAGATTCTTCATCTTGGGTGA

>Glyma06g48270.5   sequence type=CDS   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGGGAAGATCGAAATCAAAAGGATTGAGAACACAACAAATCGGCAAGTGACCTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTGTCAGTGCTGTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTATTCCAACAACAACATAAGATCAACAATAGAGAGGTACAAAAAGGCATGTTCTGATCACTCAAGCGCGAGCACTACCACAGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCTGAAATTGAATACTTCCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTCCGAACTAAGATAACTGACGTGGAGAGGATTCAGCAAGTAAACATGGTTTCTGGGCCAGAACTGAATGCCATTCAGGCATTAGCTTCCCGTAACTTCTTCAATCCAAATATGTTGGAAGGTGGAACTGTTTACCCTCACTCAGATAAGAAGATTCTTCATCTTGGGTGA

Predicted protein sequences of Glyma06g48270

Limit To All Plant Sequences

>Glyma06g48270.2   sequence type=predicted peptide   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSASTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQALASRNFFNPNMLEGGTVYPHSDKKILHLG*

>Glyma06g48270.4   sequence type=predicted peptide   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSASTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQALASRNFFNPNMLEGGTVYPHSDKKILHLG*

>Glyma06g48270.5   sequence type=predicted peptide   gene model=Glyma06g48270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSASTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQALASRNFFNPNMLEGGTVYPHSDKKILHLG*

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