Glyma06g48220 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g48220

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50486356
stop:	50490999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33490	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr1:12150941-12152276 REVERSE LENGTH=175	SoyBase	E_val: 5.00E-84	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B7F978	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J075115L08, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7F978_ORYSJ	SoyBase	E_val: 8.00E-78	ISS
UniRef100_C6SVR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVR3_SOYBN	SoyBase	E_val: 8.00E-121	ISS

Expression Patterns of Glyma06g48220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g48220

Paralog	Evidence	Comments
Glyma04g12170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g48220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g323900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g48220

Limit To All Plant Sequences

>Glyma06g48220.2   sequence type=transcript   gene model=Glyma06g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGTGGAGATTCAGCACCGCGTGGTAGTGTAGCCCAGATCTAAACTCCGTTGGTGAATTAAATGTTTTTTTATTCAATACAAAATTTGCTACGTCTTATCAATTTGTATATTAGGTGTGGAATCCAATCCATGCATCCAAATTGATAGCACGTGGATTGATTACAAGATGCCAACGTCTAAACCTCTTTTCCCCAAAGAGAAGAAAACATAATAGATATCTCATTCTCATCTTCATCTGCATCTGCCCATGTTTCTTGTTTCTGTCTGCAATTTTCAATTCCAACTCTCTCTCACATGCAATTCTCCATCCAACAAAAGTTTCTCATCATTTCTGTTTCCCATAAGCAATTAATTAAAATACTGAATTTGGTATAATTTCTTTCTCAAATATAATTAGTTTTACAATTATTTTATTTCTTTTTCCTTGGATTGTAGCCGGGGTTTCTTGTTGTGAGAGAAAAACCTTTATTCTCTGTTTTGGGAACATCTGGGGTCTCAATTTAGTGGAAGTTAAATTTTGAAACTTTGGACGAAGATGGCGAATTGGGTCCAAAAGAAGATCACTGATCCCCTTCTTTCCATTATCCGAAGAGGAGCTGAACCAAACCACTTGGCTTTCTCTGCTGCTCTTGGTGTTACATTGGGACTATTTCCTATATGTGGTATGTTGTAATTAACCCACCTGGATTTATATTGTCATTTATGTTGGATTTGTTTATTATACTTGCCACTGAACACTCAAAATCATGCTTGTAACTAAGATCTTATTGCTTGCACGATTGGTGATTGAATAGGATAGCAACTTTACAGATTTAAATGATTTTCCTGCTTATTTAAAATGTTACATGTGTCACAATAGCGGAGTGGAGATCCTTCTCCCTGTTAAAATGAAGAATTGAAGGAACTGTGATATAAATTTGGGGGTGGAAGGGTGGGGGAATAAATGTAGAATGTTTCCATGTAGTATGTAGAATGTCTATTGCTGACAAGAAAAATAGCTTCAGATTTGTGATTAGGCTCATTGTTTTCTAACTCAGTAGGCATCTTAGAGGGGTGATGACATTCAATATGTTAGATATAGAACCAACTAAAGAGAAACTTCATGCTGCACTAACTTTTGAATTAGTGAAAAATGAAAGGAGAAATGACCAACTTAGTCAGGGGCATGGAATATTTGAGTTTTTGCGCTGGATATCAGCATATTTTCAATTGACAGATGGAGACTACGTATTCTTTATTACAACCTCTTTTTTTTTTTCATAATACCTTTTCTTAACAAGTACATTCAGGATTCTGATTAAGAAAAGAAAGAGAATTACTTTTTTATATCATGTCAACCAGTATATATTGTCCCAGTGTATTAGATAATTTGACCAAACAGAGATTAAGATAATTTGATCAAATGTAAAAATTTAATAACCATTGATACTGACACCACATACACAACAAAGTTGTATCCACTACATTGAAAAGAATGTGCATAATTTCTTTCCAGTTTGATTAACATGCTTGAACATTACATTGGTTATCATAATATATAATAATTGTTAACATGGTAAAAGGGGATTTTTGGGAACAATTAATTCCTAATGATAAACATGTTGATAAGTTGAAATTTTTGGCCTTTCCGAAAAAAATGAAATTTGGTTGTTGCTTAAAGTACTGATTTTCTTTGTCAGAATATTTTAAAGTGGTTTTCATCAGAAAAGGTAAGTAGCTGTTCATCCAGGTTAATGACTGATAGGATTTCAGTTGGCTCTCTATTATCATTCATCTCTTTGCCATGAGGTTTGAACAATCAATTTTAAATTAATCAGTCTTTCCTCACAACCTCTAGATAACCACAGTTCAGAATTGGTAGCCATCTAGCATAAGTTTAGTCTCTCTCTCTCTCTAGTTTCCAAAACTATGTCTTTCCATTAACTCTAGAGATGCGACTCATGGAAAATGCAGATTTGACTAACATAATCCCAAAACTGAATCTGATTTCAAGATTGTGAAGCAACTGCATATTTAAATTAAGTATAAACTGATTCAACCTAGCAAATGCATCACAAAACAATCAAAAGAAGAAAAATAGGCTCTTAATTAGATATCTGAGAAATTATAATGATGTGAAATGTGGCAGTTCTTCTATATTTTGTTAGACATGCTAATGTTTTTCAAATAGGTGTCACTGTGTTCCTCTGTGGAATGGCTATTGCATTGCTTGGATCATTTTGCCATGCTCCAACTGTGATGCTTGCAAACTTTATTGCTACTCCAATAGAGTTGAGTCTGGTTGTACCCTTTCTACGCTTTGGTGAGGTTATCTCTGGTGGATCTCATTTCCCTTTAACATCTGATGCTTTAAAGAAAGTTCTTACTGGCCAAGCTTCACGTGAAGTCTTATTAAGTGTTGCCCATGCGTTATTAGGGTGGCTGGTTGCATCACCATTTATTTTGGGAACTCTATACATAGTTCTTTTACCATGCTTCAAAATTCTAGTTCATAAATTCTCAAGTGTTCCTTTAAGTCCAAAGAAGCCGCTCAATCCACACTCAGAAGTAAAGCTGAAGGTAAGGGATGTTTGACAAAGTAGCAACGAGATCATAGTGTCAAAATCTGCTTTGTCACAGTGATCAGTCATTGATTCATGTTCTTGTGTGACACAAATTGTACATAATTAACAAAAACTTGTCACTGTTTATATTGCTGAGATTGATGTATCCTATTTGTAAACTATGTATTTGTAAAGCATGCCATGAGTATGTGATGTGATGTTATTACCAAAAATAGTATATTGTTATTGGCCATGGGACATTTGAAGATCATAAGGAACATGGAGATCAAATTTTTCAAATAGGCTAAATTAAAAGTGCCAATAATGCAGCCGATATTTTGTTGCTTTCATCAATATCTGGCATAACGTTCTTAGAATTTCAGCAGGATGCTTTACTCATGTTCCACAC

Coding sequences of Glyma06g48220

Limit To All Plant Sequences

>Glyma06g48220.1   sequence type=CDS   gene model=Glyma06g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATTGGGTCCAAAAGAAGATCACTGATCCCCTTCTTTCCATTATCCGAAGAGGAGCTGAACCAAACCACTTGGCTTTCTCTGCTGCTCTTGGTGTTACATTGGGACTATTTCCTATATGTGGTGTCACTGTGTTCCTCTGTGGAATGGCTATTGCATTGCTTGGATCATTTTGCCATGCTCCAACTGTGATGCTTGCAAACTTTATTGCTACTCCAATAGAGTTGAGTCTGGTTGTACCCTTTCTACGCTTTGGTGAGGTTATCTCTGGTGGATCTCATTTCCCTTTAACATCTGATGCTTTAAAGAAAGTTCTTACTGGCCAAGCTTCACGTGAAGTCTTATTAAGTGTTGCCCATGCGTTATTAGGGTGGCTGGTTGCATCACCATTTATTTTGGGAACTCTATACATAGTTCTTTTACCATGCTTCAAAATTCTAGTTCATAAATTCTCAAGTGTTCCTTTAAGTCCAAAGAAGCCGCTCAATCCACACTCAGAAGTAAAGCTGAAGGTAAGGGATGTTTGA

>Glyma06g48220.2   sequence type=CDS   gene model=Glyma06g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTGCATTGCTTGGATCATTTTGCCATGCTCCAACTGTGATGCTTGCAAACTTTATTGCTACTCCAATAGAGTTGAGTCTGGTTGTACCCTTTCTACGCTTTGGTGAGGTTATCTCTGGTGGATCTCATTTCCCTTTAACATCTGATGCTTTAAAGAAAGTTCTTACTGGCCAAGCTTCACGTGAAGTCTTATTAAGTGTTGCCCATGCGTTATTAGGGTGGCTGGTTGCATCACCATTTATTTTGGGAACTCTATACATAGTTCTTTTACCATGCTTCAAAATTCTAGTTCATAAATTCTCAAGTGTTCCTTTAAGTCCAAAGAAGCCGCTCAATCCACACTCAGAAGTAAAGCTGAAGGTAAGGGATGTTTGA

Predicted protein sequences of Glyma06g48220

Limit To All Plant Sequences

>Glyma06g48220.1   sequence type=predicted peptide   gene model=Glyma06g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANWVQKKITDPLLSIIRRGAEPNHLAFSAALGVTLGLFPICGVTVFLCGMAIALLGSFCHAPTVMLANFIATPIELSLVVPFLRFGEVISGGSHFPLTSDALKKVLTGQASREVLLSVAHALLGWLVASPFILGTLYIVLLPCFKILVHKFSSVPLSPKKPLNPHSEVKLKVRDV*

>Glyma06g48220.2   sequence type=predicted peptide   gene model=Glyma06g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIALLGSFCHAPTVMLANFIATPIELSLVVPFLRFGEVISGGSHFPLTSDALKKVLTGQASREVLLSVAHALLGWLVASPFILGTLYIVLLPCFKILVHKFSSVPLSPKKPLNPHSEVKLKVRDV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain