SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10120 | AT | Annotation by Michelle Graham. TAIR10: Sucrose-phosphate synthase family protein | chr4:6315033-6319785 FORWARD LENGTH=1050 | SoyBase | E_val: 0 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0005985 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0046524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sucrose-phosphate synthase activity | SoyBase | N/A | ISS |
| KOG0853 | KOG | Glycosyltransferase | JGI | ISS | |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF169 | Panther | JGI | ISS | ||
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | ISS | |
| PF00862 | PFAM | Sucrose synthase | JGI | ISS | |
| PF05116 | PFAM | Sucrose-6F-phosphate phosphohydrolase | JGI | ISS | |
| UniRef100_B9S6X5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sucrose phosphate syntase, putative n=1 Tax=Ricinus communis RepID=B9S6X5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KFX9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFX9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g48200 not represented in the dataset |
Glyma06g48200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g12220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g323700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g48200.1 sequence type=CDS gene model=Glyma06g48200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTGTGAACGAATGGCTAAATGGTTATTTGGAGGCCATATTGGACGTGGGAAGCAGTGTAAAGGAGAAGAAAAATGATGGGAAGGTCAAGAATTTTGCAAAGTTTGAACAAGAGAAACATCAGAGAGAAGAAAAGTTGTTTAATCCCACCACCAAGTACTTTGTTGAAGAAGTTGTTAATAGCTTTAATGAACATGATCTTTACAGAACTTGGGTTAAGGTAACAGCTAGAAGGAATACCCGTGAACGTAGTAATAGGTTGGAGAATATGTGCTGGCGTATATGGCATCTAACTCGCAAAAAGAAACAGATTGCATGGGATGATGCTCAAAGGCTTGCAAGAAAGCGTCTTGATCGTGAACAAGGCCGTAACGATGCTGCAAATGACCTTTCTGAGCTCTCGGAAGGTGAGAAAGAAAAAGCAGATGCTAATGCTAATGCTAATGCTTTGGAACCTTTCAAGGATAATAATATTTCCAGAATCACTTCTGAAATGCAACTTTGGTCGGAGGAGGATGATAACTCTAGGAACCTTTATGTTGTCCTAATCAGTGTTCATGGTTTGGTACGAGGAGAAAATATGGAACTTGGGAGAGATTCTGATACTGGTGGTCAGGTGAAATATGTAGTGGAACTTGCTCGTGCTCTAGCCAACACAAAAGGAATTTACCGTGTTGACCTATTGACTAGACAAATAGCTTCACCAGTAGAAGTGGACTCTGGCTACGGAGAGCCTATTGAGATGTTGTCATGCCCCTCTGATGGCAGTGACTGTGGCGGAGCATACATCATTCGTCTTCCATGCGGACCTCGTGATAGGTACATACCAAAAGAATCACTTTGGCCTCACTTGCCTGAATTTGTGGATGGTGCTCTAGGTCACATTGTTAACATGGCAAGAGTTTTAGGGGAGCAAGTGAATAGTGGGAAGCCAACATGGCCTTATGTTATCCATGGTCACTATGCTGATGCTGGGGAGGTAGCAGCACACTTATCTGGGGCCTTGAATGTGCCTATGGTGCTCACAGGGCACTCGTTAGGTCGGAACAAGTTTGAGCAGTTGTTGAAGCAAGGGAGGCTCTCTAGGGAGGCCATAAATGCAACCTACAAGATCATGAGGAGGATTGAGGCTGAGGAGTTGGGTGTGGATGCTGCTGAAATGGTTGTCACTAGCACAAGGCAGGAGATTGAAGAGCAATGGGGACTGTATGATGGGTTTGATCTCAAGTTGGAGAGGAAGCTTAGGGTGAGGAGAAGACGCGGAGTGAGTTGCCTTGGAAGACGCACGCCAAGGATGGTGGTAATTCCTCCAGGCATGGACTTCAGCTATGTCACAACACAAGACTCAGTGGAAGGTGAGGGGGACCTCAACTCATTCATTGGATCTGACAGAGCTCAAAGCAAAAGGAACTTGCCTCCAATTTGGTCTGAGATAATGAGATTTTTCACAAATCCTCACAAACCAACAATACTAGCCTTGTCCCGTCCTGACCCGAAGAAAAATGTCACGACTTTGCTCAAGGCTTTTGGGGAATGCCAGGCCCTAAGAAAACTAGCTAACTTGACCCTCATACTTGGCAACAGAGATGACATTGAAGAAATGTCTAGCAGCAGCTCTACTGTTCTTACCATGGTGCTCAAACTCATTGACAAGTATGATTTGTATGGTCAAGTGGCTTATCCCAAGCATCATAAGCAATCTGAAGTTCCAGAAATATATCGTCTGGCTGCAAAGACTAAGGGAGTTTTTATCAACCCAGCCCTGGTGGAACCATTTGGTCTCACACTAATCGAGGCTGCAGCTTATGGTTTACCTGTTGTTGCAACAAAAAATGGAGGGCCAGTGGATATTCTAAAGGCACTCAACAATGGACTCTTGATTGATCCACATGACCAGAAAGCCATAGAAGATGCACTGCTAAAGCTTGTTGCAGACAAAAATCTTTGGCTAGAATGCCGCAAAAATGGCCTAAAAAACATCCATCGGTTTTCTTGGCCTGAACACTGCCGCAACTACCTCTCCCATGTTGAGTATGGCAGGAACCGCCACTCCACATCCCGCTTGGAAATTACACCAATGACTGAAGAATCAATAAGTGACTCATTGAGAGATGTAGAAGACATTTCTTTTAGATTCTCCACAGAAGGAGACTCCAAGCAGAATGGAGAGATGGACACTGCAGCAAGGCAGAAGCAAATTATTGAAGCAATCATGTGCAGGGTCTCTTCCACTGGCAAGTCTAATGCCAGTTACTTTCCTGGTAGGAGGCAAAGGCTTGTTGTGGTAGGTGCTGATTGTTATGATAGTGATGGAAATATAGCTGAGGAGGATTTTCAGGCAGTTATCATGAATGTGATGAAATCCGTGCGACCAGGCATCAGATCAGGCAAGGTTGGTGTGGTGTTGCTAACCGGTTTGAGTTTTCAGGAGACAACTGAAGCATTGAACAGCTTCCAAGTGAACATAGAAGAATTTGATGCTGTGGTTTGCAACAGTGGAAGTGAAATGTATTATCCATGGAAAGATTTAATGGCTGATGCTGATTATGAGGCCCATGTTGAGTATGCATGGCCAGGTGAGAATATTAGATCAACAATAACCAGGCTTGCTAAAGTTGATGATGGAGAGGAGAATGGCATCATAGAGTATGCTAGTGCTTGCAGTTCAAGGTGCTACTCCTATAGTGTGAAATCAGGAGCCATGATCCGGAAGATAGACGAGCTTCGCCAAAGGTTGCGAATGAGAGGCTTACGCTGTAATCTGGTCTATACACATGCAGGATTGAGATTAAATGTGATACCATTATTTGCTTCAAGAAAACAAGCACTAAGGTATCTGTCAGTCAAGTGGGGAATTGATCTATCCAAAGTGGTTGTATTTGTGGGAGAAAAAGGTGACACGGATTATGAAGAACTAGTGGCTGGCATACAGAAGACACTTGTTTTAAAGGGGGCTGTTGAATATGGCAGTGAAAGGCTTCTTCGCAGTGAAGACAGTTACAAAAGAGAAGATGTGTTCTCCCAAGATAGCCCCAACATTATTTATGCAGAGAAGAGCTATGAGGACTGTGATATTTCAGCAATTTTGGAGCATCTCAAAGTATCATGA
>Glyma06g48200.1 sequence type=predicted peptide gene model=Glyma06g48200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAVNEWLNGYLEAILDVGSSVKEKKNDGKVKNFAKFEQEKHQREEKLFNPTTKYFVEEVVNSFNEHDLYRTWVKVTARRNTRERSNRLENMCWRIWHLTRKKKQIAWDDAQRLARKRLDREQGRNDAANDLSELSEGEKEKADANANANALEPFKDNNISRITSEMQLWSEEDDNSRNLYVVLISVHGLVRGENMELGRDSDTGGQVKYVVELARALANTKGIYRVDLLTRQIASPVEVDSGYGEPIEMLSCPSDGSDCGGAYIIRLPCGPRDRYIPKESLWPHLPEFVDGALGHIVNMARVLGEQVNSGKPTWPYVIHGHYADAGEVAAHLSGALNVPMVLTGHSLGRNKFEQLLKQGRLSREAINATYKIMRRIEAEELGVDAAEMVVTSTRQEIEEQWGLYDGFDLKLERKLRVRRRRGVSCLGRRTPRMVVIPPGMDFSYVTTQDSVEGEGDLNSFIGSDRAQSKRNLPPIWSEIMRFFTNPHKPTILALSRPDPKKNVTTLLKAFGECQALRKLANLTLILGNRDDIEEMSSSSSTVLTMVLKLIDKYDLYGQVAYPKHHKQSEVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAYGLPVVATKNGGPVDILKALNNGLLIDPHDQKAIEDALLKLVADKNLWLECRKNGLKNIHRFSWPEHCRNYLSHVEYGRNRHSTSRLEITPMTEESISDSLRDVEDISFRFSTEGDSKQNGEMDTAARQKQIIEAIMCRVSSTGKSNASYFPGRRQRLVVVGADCYDSDGNIAEEDFQAVIMNVMKSVRPGIRSGKVGVVLLTGLSFQETTEALNSFQVNIEEFDAVVCNSGSEMYYPWKDLMADADYEAHVEYAWPGENIRSTITRLAKVDDGEENGIIEYASACSSRCYSYSVKSGAMIRKIDELRQRLRMRGLRCNLVYTHAGLRLNVIPLFASRKQALRYLSVKWGIDLSKVVVFVGEKGDTDYEELVAGIQKTLVLKGAVEYGSERLLRSEDSYKREDVFSQDSPNIIYAEKSYEDCDISAILEHLKVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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