Glyma06g48170 - SoyBase

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Report for Sequence Feature Glyma06g48170

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50448154
stop:	50452349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43280	AT	Annotation by Michelle Graham. TAIR10: Far-red impaired responsive (FAR1) family protein \| chr2:17989739-17990861 FORWARD LENGTH=206	SoyBase	E_val: 6.00E-105	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
UniRef100_D7LJZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Far-red impaired responsive family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LJZ7_ARALL	SoyBase	E_val: 9.00E-104	ISS
UniRef100_I1KFX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFX4_SOYBN	SoyBase	E_val: 4.00E-179	ISS

Expression Patterns of Glyma06g48170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g48170

Paralog	Evidence	Comments
Glyma04g12273	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g48170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g323400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g48170

Limit To All Plant Sequences

>Glyma06g48170.4   sequence type=transcript   gene model=Glyma06g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACATATAGCATTGTTGTTGAAAATGCTTGGAAATTGAAATCACGTTTTATGAAAATCAGTAAACGCACAAAGGTTTAGGGCACTGAACTCAAGTGAAGTGGCGACAAACACCGCACTTCAACGGCTGGCACCGAGCCAGGACCACACCGGTGGGTTCCAGTAGAGAGAAGCTCTCAAAAGCACTTCTGGCTTGTATCCAAACAGGCCCATAATAATAATAACAATAATATATTTGTTCTGCTGAGAAAAGGAACCGCACCTGCTAATTTGAATTTGTGTGGTTCTATAAGGCTACATCTATATGGAATCCCAATTAGTTGATGGTAATGATGATATGGGAGTTTCTGGGGATGTGGGTTTGAGTACGTATGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGAGTGTAGAGTACTAGAGAGTTCTTCTGGGGGAGAGGTGGGTATCTGCGATGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGATATTCTATGATGAATATGCCCGGCGTTTAGGATTTGTTATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGGAAATTTTCATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATAATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAAAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAAAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAGCAGTGCATCATGTCGCGGTGTGACCACTAAAACGTGTCATGTTCAAAGAATGATCCTTTAATCCTTCATGAATTGCATATGCTGATTCAGTGAATACTTTGGTAAGGCTAGCCTATTTTTTCGGAGAACTGATAAGGCTAGCTTTGCCACAAAGAGAAGGCCACCACACACACACACACATATAAACTGTGAAGTTATATAGGTTGTCATAGTGCTTAAAAGCTAAAAGAGGTTTTTATGACATTTTGGCAACTGACACAAACTAGTTACGCCCCTTTAAGCCTAAGGGTACGATGTAATCTTGTATCATTATTGTACTCCCCTAATTTTACAGAACAAAATGTAAACAACAATAATATTGTAACTTGCTTAGTTTGAAACTGCTGTCAGCTAAATATTATTGTTTATAGGAGAAATGTGTTGGAATGTTTTATCACGCGAGAAACTACTGTGTAATGTAATCGATCCTATAACTTTTCTTTTTATATATTTGTCAATACTTTAGAAAAAATTTAAAA

Coding sequences of Glyma06g48170

Limit To All Plant Sequences

>Glyma06g48170.3   sequence type=CDS   gene model=Glyma06g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCAATTAGTTGATGGTAATGATGATATGGGAGTTTCTGGGGATGTGGGTTTGAGTACGTATGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGAGTGTAGAGTACTAGAGAGTTCTTCTGGGGGAGAGGTGGGTATCTGCGATGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGATATTCTATGATGAATATGCCCGGCGTTTAGGATTTGTTATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGGAAATTTTCATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATAATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAAAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAAAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAG

>Glyma06g48170.4   sequence type=CDS   gene model=Glyma06g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCAATTAGTTGATGGTAATGATGATATGGGAGTTTCTGGGGATGTGGGTTTGAGTACGTATGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGAGTGTAGAGTACTAGAGAGTTCTTCTGGGGGAGAGGTGGGTATCTGCGATGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGATATTCTATGATGAATATGCCCGGCGTTTAGGATTTGTTATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGGAAATTTTCATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATAATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAAAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAAAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAG

Predicted protein sequences of Glyma06g48170

Limit To All Plant Sequences

>Glyma06g48170.3   sequence type=predicted peptide   gene model=Glyma06g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQLVDGNDDMGVSGDVGLSTYEVQMHQETYEVDPNEECRVLESSSGGEVGICDDHAIQEPYEGMEFESEDAAKIFYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYNKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRHKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLHQT*

>Glyma06g48170.4   sequence type=predicted peptide   gene model=Glyma06g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQLVDGNDDMGVSGDVGLSTYEVQMHQETYEVDPNEECRVLESSSGGEVGICDDHAIQEPYEGMEFESEDAAKIFYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYNKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRHKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLHQT*

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