Glyma06g48111 - SoyBase

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Report for Sequence Feature Glyma06g48111

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50424393
stop:	50426650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48111

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33925	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:16263292-16264064 FORWARD LENGTH=132	SoyBase	E_val: 6.00E-51	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0044212	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding	SoyBase	N/A	ISS
UniRef100_G7JSF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Zinc finger SWIM domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JSF7_MEDTR	SoyBase	E_val: 1.00E-67	ISS
UniRef100_G7JSF7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger SWIM domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JSF7_MEDTR	SoyBase	E_val: 1.00E-67	ISS

Expression Patterns of Glyma06g48111

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g48111 not represented in the dataset	Glyma06g48111 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g48111

Paralog	Evidence	Comments
Glyma04g12305	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g48111 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g322800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48111

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g48111

Limit To All Plant Sequences

>Glyma06g48111.2   sequence type=transcript   gene model=Glyma06g48111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAAAGGCATTGAAGCAAATAGACTATTACTAGTTGCGGCCCCACTATTTATTAATGCACTCCATTTTTTATTTTTCTTCCAAAATAACCCCAAAAATAGACTCCTCTAATTCCCTATCCCTTTGTCAATCTGCAACGAAATCATTGAAGGAGAAGGCTTTTCTACCATCGATCCCAACAGCCATCAGTAACAGGGTAATGGTAATCAGTAGTAATACAGAATGAGTGCAAGCAGTTTGGTAGCAGAGGCAGTATGGAAGGAAATTGAGTCTACACACTCAGTGAATGATGATCAACTTTGGACTTTGCATTTCTTGTTTGGCAAGAACTTTGAGGGAGCCACTAGAATTGTCGACCAAAGAGGTGTTAGCAAGATATCTGCTCACCCCAGTGGAAGGTTTATCTTTCAGGTTACAGGGGAATCCCGAAGAAAAGACCAGTATCTGTGTTTTGCTGAAAATTTTTGCGCTTGTTATTCGTTCTTCTATGATGTTGTCAACAGAGGAGAACAACTTTGTTGTAAACATCAACTAGCTGCAAGACTTGCTGCATCTTTGGGATCTTATGTTGAAGTTAAGGTGTCTGATGAGGAGCTAGCTGTGCTACTGTCCAAAGTATAGCCCTTGCTATGAAGAACAATTTGTAATTTTTTTAGTATTGGTTTTATGGAGCAAAGAACATATCATTCTTAGATTTAGTTAACAGTGAAGATCTCAGGTCAAATAACATAAAGAAAATAATGCTTTTCGCTAATTTAACTTTTTGT

Coding sequences of Glyma06g48111

Limit To All Plant Sequences

>Glyma06g48111.1   sequence type=CDS   gene model=Glyma06g48111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTAATGCAGCCACAATTGCAATCACAATGTGGTTGCAGAAACCCAATGTTCCTTCATGTTCTGGTTGCAATTATGGGTGTGGCCTGTTTTTTAAAACCTTGCTTTAAATTATTGACTCATGACCCAAGACCCTCTTACTTTCATGTCACAGTGAATGATGATCAACTTTGGACTTTGCATTTCTTGTTTGGCAAGAACTTTGAGGGAGCCACTAGAATTGTCGACCAAAGAGGTGTTAGCAAGATATCTGCTCACCCCAGTGGAAGGTTTATCTTTCAGGTTACAGGGGAATCCCGAAGAAAAGACCAGTATCTGTGTTTTGCTGAAAATTTTTGCGCTTGTTATTCGTTCTTCTATGATGTTGTCAACAGAGGAGAACAACTTTGTTGTAAACATCAACTAGCTGCAAGACTTGCTGCATCTTTGGGATCTTATGTTGAAGTTAAGGTGTCTGATGAGGAGCTAGCTGTGCTACTGTCCAAAGTATAG

>Glyma06g48111.2   sequence type=CDS   gene model=Glyma06g48111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCAAGCAGTTTGGTAGCAGAGGCAGTATGGAAGGAAATTGAGTCTACACACTCAGTGAATGATGATCAACTTTGGACTTTGCATTTCTTGTTTGGCAAGAACTTTGAGGGAGCCACTAGAATTGTCGACCAAAGAGGTGTTAGCAAGATATCTGCTCACCCCAGTGGAAGGTTTATCTTTCAGGTTACAGGGGAATCCCGAAGAAAAGACCAGTATCTGTGTTTTGCTGAAAATTTTTGCGCTTGTTATTCGTTCTTCTATGATGTTGTCAACAGAGGAGAACAACTTTGTTGTAAACATCAACTAGCTGCAAGACTTGCTGCATCTTTGGGATCTTATGTTGAAGTTAAGGTGTCTGATGAGGAGCTAGCTGTGCTACTGTCCAAAGTATAG

Predicted protein sequences of Glyma06g48111

Limit To All Plant Sequences

>Glyma06g48111.1   sequence type=predicted peptide   gene model=Glyma06g48111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLMQPQLQSQCGCRNPMFLHVLVAIMGVACFLKPCFKLLTHDPRPSYFHVTVNDDQLWTLHFLFGKNFEGATRIVDQRGVSKISAHPSGRFIFQVTGESRRKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARLAASLGSYVEVKVSDEELAVLLSKV*

>Glyma06g48111.2   sequence type=predicted peptide   gene model=Glyma06g48111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASSLVAEAVWKEIESTHSVNDDQLWTLHFLFGKNFEGATRIVDQRGVSKISAHPSGRFIFQVTGESRRKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARLAASLGSYVEVKVSDEELAVLLSKV*

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