Report for Sequence Feature Glyma06g48100
Feature Type: gene_model
Chromosome: Gm06
Start: 50419388
stop: 50421969
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g48100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G10170 AT
Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein | chr4:6344587-6345351 FORWARD LENGTH=254
SoyBase E_val: 2.00E-94 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG0859
KOG
Synaptobrevin/VAMP-like protein
JGI ISS
UniRef100_A9TZJ4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: VAMP-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TZJ4_PHYPA
SoyBase E_val: 1.00E-28 ISS
UniRef100_I1KFW6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFW6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g48100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g48100
Paralog Evidence Comments
Glyma04g12340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g48100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g322700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g48100
Transcripts of Glyma06g48100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g48100.3 sequence type=transcript gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTATTGTGCACCTTCCCACATAAAAACTGTCTTTCTTCCTTCTTCGCTGAACCCTCCCTCCCTCTCCGACATGGCTGTGTGAATGTGATGAATCTTATGGTTTATAAAAGTGGTCCACGCTAATCTTCGTCCAGTTTAAATTATTAAATTTTGAATAAACTGTTGTTATGGAAACCAAATCCAAAAAGAATATCAATATATTATCATTCATTGCCAGCTACCAATACACTGTATATAAATAAATTTTCAAAGTAAAACCAAAAGCAGAAAACATTGCATGTTAAGATTCACCCACATTACACGGTTTGTGTTGTGTTGTGCCTGCCCTGTCCGTGGCATTTTCGTCTTTCTCTAATTTCTTCTTCTTTCTTTCTCTCACTTCTCTTTTGAATCAATCTCATCTCATCCCTAACAACCACACATGCACGCACCACCATCAGATGTTGTTCTGAGATAATCCAGATACCCTTTAAGGTTTTTTACTTCATAGCTGCAGAATTCCTTGCACTTTGCTTGGTTTTTGTCTCTTTCCTTGAGGGTTATCGGATTCTTCCTTTGCCAAATCTTGACTGCTATGTTCTTCAGTTGGGATGAAACATGATGAAGACTTCGGCTCGATTTTACAATAAAGGGATATTGGTATTCAGTGAAGTGAAGTTAACATTTGAGATACAGAACAAGAGAAAAGCAAATTTGATGTAACTTTTTCTGATTTTTTGGCCTGGTATTGTAGAGGAGTTTGGTTGAAATCTGATCAGGGTTATTGTTTACTGATTTTCGATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAGAATTCAAACTTCTTGTGTGACTCTGAATTTGAATCACTATCATATTGGAACTTGAGATTTTCCATGCATGGTCTGATCTGATCAGCAACAGAAATTAGTTTCTTCGATGGGGCATGTAGATTGAAGTTACAAACCGGTCATGTTGATTAGATCTTTAGTGCTATTTGCAGGCACGTGCTTCTTGTCACCCATATATAGGCATTTTACTTTATAAAGTCTACTGTACAGTTTCATTACTCTTAGACATCTGTACTTGTATATGAATTTTGGGAAGATTTTAAAGGTTCTTGATTCACCTGTTTCTATAGTTTTTTTTAAGTAGATAATTATTTTCTAATATAGAGATGACCAATATTCTCAAATCTCAAGTTGTATATGCAGAATAATTATGCCACCGAAATTCTTTAGGTATGTTTTGACCACCTTTTATAGCTTAGATATTGTTGCTCATAAAATATATACTTTTA
>Glyma06g48100.4 sequence type=transcript gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTATTGTGCACCTTCCCACATAAAAACTGTCTTTCTTCCTTCTTCGCTGAACCCTCCCTCCCTCTCCGACATGGCTGTGTGAATGTGATGAATCTTATGGTTTATAAAAGTTTTTTACTTCATAGCTGCAGAATTCCTTGCACTTTGCTTGGTTTTTGTCTCTTTCCTTGAGGGTTATCGGATTCTTCCTTTGCCAAATCTTGACTGCTATGTTCTTCAGTTGGGATGAAACATGATGAAGACTTCGGCTCGATTTTACAATAAAGGGATATTGGTATTCAGTGAAGTGAAGTTAACATTTGAGATACAGAACAAGAGAAAAGCAAATTTGATGTAACTTTTTCTGATTTTTTGGCCTGGTATTGTAGAGGAGTTTGGTTGAAATCTGATCAGGGTTATTGTTTACTGATTTTCGATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAGAATTCAAACTTCTTGTGTGACTCTGAATTTGAATCACTATCATATTGGAACTTGAGATTTTCCATGCATGGTCTGATCTGATCAGCAACAGAAATTAGTTTCTTCGATGGGGCATGTAGATTGAAGTTACAAACCGGTCATGTTGATTAGATCTTTAGTGCTATTTGCAGGCACGTGCTTCTTGTCACCCATATATAGGCATTTTACTTTATAAAGTCTACTGTACAGTTTCATTACTCTTAGACATCTGTACTTGTATATGAATTTTGGGAAGATTTTAAAGGTTCTTGATTCACCTGTTTCTATAGTTTTTTTTAAGTAGATAATTATTTTCTAATATAGAGATGACCAATATTCTCAAATCTCAAGTTGTATATGCAGAATAATTATGCCACCGAAATTCTTTAGGTATGTTTTGACCACCTTTTATAGCTTAGATATTGTTGCTCATAAAATATATACTTTTA
Coding sequences of Glyma06g48100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g48100.2 sequence type=CDS gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAG
>Glyma06g48100.3 sequence type=CDS gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAG
>Glyma06g48100.4 sequence type=CDS gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAG
Predicted protein sequences of Glyma06g48100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g48100.2 sequence type=predicted peptide gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSIQNKVYYCCVSKGNNVMYVYSGGDQEDENVAALCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGFGNPVVLQFLEHVRDEFKKLSRKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGSSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHRKSTDRGARVDSGNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICRGISCIR*
>Glyma06g48100.3 sequence type=predicted peptide gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSIQNKVYYCCVSKGNNVMYVYSGGDQEDENVAALCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGFGNPVVLQFLEHVRDEFKKLSRKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGSSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHRKSTDRGARVDSGNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICRGISCIR*
>Glyma06g48100.4 sequence type=predicted peptide gene model=Glyma06g48100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSIQNKVYYCCVSKGNNVMYVYSGGDQEDENVAALCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGFGNPVVLQFLEHVRDEFKKLSRKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGSSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHRKSTDRGARVDSGNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICRGISCIR*