Glyma06g48080 - SoyBase

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Report for Sequence Feature Glyma06g48080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50396342
stop:	50398282
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24000	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:8672774-8674881 FORWARD LENGTH=665	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7I3E0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I3E0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KFW4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g48080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g48080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g322500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g48080

Limit To All Plant Sequences

>Glyma06g48080.2   sequence type=CDS   gene model=Glyma06g48080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCAATGTGAAAGGTCTTCATCGGTTTTGAAATCATTGCTCCAAATCGTATCTCCATGTAAACGAGATTTGGGTAGCTTTCGCAGACTTTGGCAACATTCTGAGTCCACTTTCTGTGTTATAGACGACAGGAACCTTCTGAGGCCGAGTCTCAACTCCAAAACCGGTCTTCACGTTCTGGACCTCATTGACTGCGGTTCGCTCGAACCGGATCGAACCCTGTACAACACGCTCTTAAAGAGGTGCACCCAATTGGGGAAGCTCAAAGAAGGAAAACTAGTGCACTTCCACGTTCTCAACTCCAACTTCAAACATGACCTTGTTATTCAGAACTCCCTTCTCTTCATGTACGCCCGCTGTGGCAGTTTGGAAGGCGCGCGCCGCCTGTTCGACGAAATGCCGCACAGGGACATGGTCTCTTGGACCTCCATGATCACCGGCTATGCTCAAAACGACCGCGCCAGTGACGCCCTCCTGTTGTTTCCTCGGATGCTTAGTGATGGCGCGGAGCCGAACGAGTTCACGTTGTCGAGCTTGGTGAAGTGTTGTGGGTATATGGCGAGTTATAATTGTGGGAGGCAGATTCATGCGTGTTGTTGGAAGTATGGATGTCACTCTAATGTGTTTGTGGGGAGTTCCCTTGTGGATATGTATGCTAGGTGTGGCTACTTAGGGGAGGCAATGTTGGTTTTCGATAAGTTGGGGTGTAAGAATGAGGTTTCTTGGAATGCTTTGATAGCCGGTTATGCTAGGAAGGGGGAAGGAGAGGAGGCTTTGGCTTTGTTTGTGAGGATGCAAAGGGAAGGTTATAGGCCGACTGAGTTTACTTATTCGGCGCTTTTGAGTTCTTGTTCCAGTATGGGCTGTTTGGAGCAAGGGAAATGGCTTCATGCGCATTTGATGAAATCGAGTCAGAAGTTGGTTGGTTACGTGGGGAACACGCTACTTCACATGTATGCAAAGTCGGGCAGCATCCGGGATGCGGAGAAGGTTTTTGACAAGTTGGTGAAAGTCGATGTTGTTTCTTGCAATTCGATGCTGATAGGGTATGCCCAACATGGGCTTGGGAAGGAAGCTGCACAGCAATTTGACGAAATGATAAGATTTGGGATTGAACCCAATGATATAACATTCCTCTCTGTTCTTACTGCTTGTAGCCATGCTAGACTTTTGGATGAGGGTAAACATTATTTTGGATTGATGAGAAAGTACAATATTGAACCAAAAGTGTCACATTATGCGACAATTGTTGATCTTCTTGGCCGAGCTGGTCTTCTTGACCAAGCAAAGAGTTTCATAGAAGAAATGCCAATTGAGCCCACTGTGGCTATCTGGGGTGCTTTGCTTGGTGCTTCCAAGATGCATAAGAACACCGAAATGGGTGCTTATGCTGCTCAGCGGGTTTTTGAGCTTGATCCTTCATACCCAGGGACACATACATTGCTTGCCAATATTTATGCCTCAGCTGGGAGGTGGGAGGATGTTGCAAAAGTCAGAAAGATAATGAAAGATAGTGGAGTGAAGAAGGAGCCAGCATGTAGCTGGGTTGAGGTTGAAAATTCTGTCCATGTGTTTGTGGCAAATGACGTTGCTCATCCTCAGAAAGAAAAGATCCATAAAATGTGGGAGAAGCTTAATCAGAAAATTAAGGAGATTGGCTATGTTCCTGACACTAGCCATGTGCTTCTGTTCGTAGACCAACAAGAGAAGGAACTAAATTTACAGTATCATAGTGAGAAGCTGGCTCTTTCATTTGCCCTTCTGAATACTCCTCCTGGATCCACTATACGCATTATGAAGAATATTAGGGTTTGTGGTGATTGCCACTCAGCAATAAAATATGTGTCATTGGTGGTGAAGAGGGAAATCATTGTGAGAGACACCAATCGGTTTCATCATTTTTGTGATGGCTTCTGCTCGTGTGGGGATTACTGGTAG

Predicted protein sequences of Glyma06g48080

Limit To All Plant Sequences

>Glyma06g48080.2   sequence type=predicted peptide   gene model=Glyma06g48080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIQCERSSSVLKSLLQIVSPCKRDLGSFRRLWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW*

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