Glyma06g48070 - SoyBase

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Report for Sequence Feature Glyma06g48070

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50383199
stop:	50391119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56140	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr5:22725462-22727932 FORWARD LENGTH=315	SoyBase	E_val: 1.00E-149	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1588	KOG	RNA-binding protein Sam68 and related KH domain proteins	JGI		ISS
PTHR11208	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR11208:SF25	Panther		JGI		ISS
UniRef100_G7J0G1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: KH domain-containing protein n=2 Tax=Medicago truncatula RepID=G7J0G1_MEDTR	SoyBase	E_val: 5.00E-178	ISS
UniRef100_I1KFW3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFW3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g48070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g48070

Paralog	Evidence	Comments
Glyma04g12370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g48070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g322300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g48070

Limit To All Plant Sequences

>Glyma06g48070.1   sequence type=CDS   gene model=Glyma06g48070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCATCTTCCGGCGCCGCCAGGTACATGGCTTTTCCACCCTCGCCCTCCGCGCCTCCGTCGCCGCACCTCTCCGGTGCTCTTCGCTCCACTCCCCTCTCCGACCCGGACAAATATCTTACTGAATTGTTGGGAGAACGTAACAAGCTTAGTCCCTTCATGGCGGTCCTTCCCCACTGCTTTCGATTGTTAAACCAAGAAATTTTGCGTGTAACCACGCTGATGGGGAATGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCTAGCCCCCTGGCTACCGGTGGAATATTTTCAAATGGAGGTGCCGATGTGAACGGATGGGCATCACGATTTCAATCAGAAAGACCTAGCTTGTTACAGTCCTCTTCAACACAAAGCTGGCTGAGTCCACAAGGTAGCTCATCTGGTATTATTGTTAAAAAGACGGTCAGAGTAGATATTCCTGTGGACGCATATCCTAATTTTAACTTTGTTGGTCGCCTCCTAGGCCCTAGAGGAAATTCTCTAAAGCGTGTAGAAGCAAGTACCGAGTGTCGTGTCTTGATCAGGGGCCGAGGTAGCATTAAGGATCCAGCTAGGGAGGAAATGATGAGAGGGAAACCTGGGTATGAACATCTGAATGAACCTCTCCACATTCTAGTTGAGGCAGAATTACCTGTTGAAATAGTAGATGCTCGTTTGATGCAAGCACGTGACATACTTGAAGATTTGCTCAAACCGGTGGATGAATCTCAGGATTTCTACAAGAAGCAGCAACTTCGGGAGTTAGCAATGCTGAATGGCACTCTTCGCGAGGAGGGTTCTCCCATGTCTGGTTCTGTTTCACCCTTCCACAACAGCCTTGGTATGAAGAGGGCCAAGACCAGGGGGTAA

Predicted protein sequences of Glyma06g48070

Limit To All Plant Sequences

>Glyma06g48070.1   sequence type=predicted peptide   gene model=Glyma06g48070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSSSGAARYMAFPPSPSAPPSPHLSGALRSTPLSDPDKYLTELLGERNKLSPFMAVLPHCFRLLNQEILRVTTLMGNASVLGQSGLEHASPLATGGIFSNGGADVNGWASRFQSERPSLLQSSSTQSWLSPQGSSSGIIVKKTVRVDIPVDAYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQARDILEDLLKPVDESQDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG*

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