Glyma06g48000 - SoyBase

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Report for Sequence Feature Glyma06g48000

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50348918
stop:	50350863
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g48000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20860	AT	Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein \| chr4:11172726-11174318 FORWARD LENGTH=530	SoyBase	E_val: 0	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR11748	Panther	D-LACTATE DEHYDROGENASE	JGI		ISS
PTHR11748:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF08031	PFAM	Berberine and berberine like	JGI		ISS
UniRef100_I1KFV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFV5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2PMD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAD-linked oxidoreductase 2 n=1 Tax=Glycine max RepID=Q2PMD4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g48000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g48000

Paralog	Evidence	Comments
Glyma04g12580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g48000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g321600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g48000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g48000

Limit To All Plant Sequences

>Glyma06g48000.1   sequence type=CDS   gene model=Glyma06g48000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAGTTATTGTGCAGTGTTTCTGATACTGCTTATTCCAATCTCACGTGCAGATGCTACATCAGTTGAGAAGCAATTCAAGGAATGCTTGTTAACCCAACTTGATGGAAATTCTGAACACATTGAAAAAATAACCTTCACCTCATCCTCCACACTATATCCCCAAGTTTGGGATTCATTGGCACAAAATCCAAGATGGGTTAATATTTCATCAAGGAAGCCTCTTATGATTCTAACACCTTTCCATGAATCAGAAATTCAAGCAGCCATTCTATGCAGCAAAGAACTGAAGTTGCAGCTAAGAGTGAGAAGTGGAGGCCATGATTATGAAGGGCTATCATACCTTAGTGATGTACCATTTGTGATGGTTGACCTGATCAACATCCGTTCCATTGAAATTAACCTTGCTGATGAAACAGCTTGGGTTCAGGCTGGGGCATCAATAGGTGAACTTTACTACAAAATTTCAAAAGCAAGTAAAGTGCACGGATTCCCGGCAGGAACCTGTCCAAGTGTAGGGATAGGAGGACATATAAGTGGAGGGGGACAGGGTCTGATGTTGAGGAAGCATGGCCTAGCAGCAGACAATGTTGTCGATGCTTACCTCATAGATGCAAATGGGAAGATTCATGATAGAAAATCAATGGGAGAAGATGTTTTCTGGGCCATCAGAGGAGGTGATGCTTCTAGTTTTGGAGTCATCCTTGCATGGAAGATCAAGTTGGTCAGAGTTCCACCTATTGTTACCGGGTTCAACGTTCCTAGAACACCTGAGGAAGGAGTCACCGATCTCATTCACAGGTGGCAATACATAGCACATGACTTGCATGAGGATCTTGTCATTAGAGTAATTGCTCAAATTAGTGGCCATGACAAATCAAAAAAATTCCGAGCAACCTTCAACTCTATTTTCCTAGGAGGAGTAGACAGGTTGATCCCACTGATGAATGAGAGTTTCCCTGAATTGGGATTGCAGGCCAAAGACTGCACTGAAATGAGCTGGATTCAATCAGTTATGTTCATAGCTGGATACAACATAGAGGACCCTCTAGAACTCTTGCTCAACAGAACTACCATGTTTAAAAGATCTTTCAAGGCCAAGTCTGACTTCTTTAAGGAGCCTGTACCAAAATCTGGTCTAGAAGGAGCTTGGAAACTGCTTCTAGAAGAAGAAATAGCCTTCCTGATAATGGAACCATATGGTGGTAGAATGAATGAAATTTCAGAATCTGAAATTCCTTTTCCCCACAGAAAGGGCAACTTGTACAACTTACAATACTTGGTCAATTGGGAAGTGAATAGCGACGAAGCATCCAGGAGGCATCTACAATGGGCCAAAATGGTTTATAAATACATGACTCCTTATGTCTCAAAATCTCCTAGAGCTGCCTATTTCAACTATAAGGATCTTGATTTGGGCAAAAACAAGCTGGACAGCACAAGCTACTCAGAAGCTAGTGTTTGGGGCAAGAAGTACTTTAAGGGAAACTTTAGGAGATTAGCTCAAATTAAGACAAAGTTTGACCCCCTAAATTTTTTCAGGAATGAACAGAGTATTCCTCTCCTTAATTCCCACCATTCTTAA

Predicted protein sequences of Glyma06g48000

Limit To All Plant Sequences

>Glyma06g48000.1   sequence type=predicted peptide   gene model=Glyma06g48000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSYCAVFLILLIPISRADATSVEKQFKECLLTQLDGNSEHIEKITFTSSSTLYPQVWDSLAQNPRWVNISSRKPLMILTPFHESEIQAAILCSKELKLQLRVRSGGHDYEGLSYLSDVPFVMVDLINIRSIEINLADETAWVQAGASIGELYYKISKASKVHGFPAGTCPSVGIGGHISGGGQGLMLRKHGLAADNVVDAYLIDANGKIHDRKSMGEDVFWAIRGGDASSFGVILAWKIKLVRVPPIVTGFNVPRTPEEGVTDLIHRWQYIAHDLHEDLVIRVIAQISGHDKSKKFRATFNSIFLGGVDRLIPLMNESFPELGLQAKDCTEMSWIQSVMFIAGYNIEDPLELLLNRTTMFKRSFKAKSDFFKEPVPKSGLEGAWKLLLEEEIAFLIMEPYGGRMNEISESEIPFPHRKGNLYNLQYLVNWEVNSDEASRRHLQWAKMVYKYMTPYVSKSPRAAYFNYKDLDLGKNKLDSTSYSEASVWGKKYFKGNFRRLAQIKTKFDPLNFFRNEQSIPLLNSHHS*

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