Glyma06g47971 - SoyBase

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Report for Sequence Feature Glyma06g47971

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50327069
stop:	50331675
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47971

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26455	AT	Annotation by Michelle Graham. TAIR10: WPP domain interacting protein 1 \| chr4:13365737-13367384 FORWARD LENGTH=489	SoyBase	E_val: 2.00E-50	ISS
UniRef100_G7J0C1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WPP domain-interacting protein n=1 Tax=Medicago truncatula RepID=G7J0C1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFV3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KFV3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47971

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g47971 not represented in the dataset	Glyma06g47971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47971

Paralog	Evidence	Comments
Glyma04g12630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47971 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g321400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47971

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g47971

Limit To All Plant Sequences

>Glyma06g47971.1   sequence type=CDS   gene model=Glyma06g47971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGGAAGCGAATCCGTGGAAGAGAATGAAGTGAATCATGATGGGAATGGAAACGGTGGTTCTTATGATGATGACGAGATAATTGGGTTTGGTTTGGAGGGAAATTCGGATGTCAATGGTTCGGATCAAAAGGGAACGGTTGGTGAAGTTGAAGTGGGTAGTAGTGGGGAAGGTGTGAATTCCAAAGGGACACCAACAAAGGGGTTTGGGTTGAAGAAATGGAAGAGAATTAGGAGGAATGTTGTTAAGGATCCGAGTTCGAGCGTTGATTCCGGTAAAGTCTTGAAGAGGGGGTTGTCTGGCAATGCCAATTTGAGTGAAAGCCAGTCTTTTCTGCGCGATGTTAAGGAGAAGAGCGATGGATCTTCGAATATGTTTGGGAATGTAGTGTTTTCAGATGGCAATGTGATCCACGGTTCGAGTTTGGATTCTAGATATGCACTTGGATCTGGTTTTGTTGTTGGGACTGATTCTGAGAATAGCGAGGATCGGAGTAGCAAGTCTTCTACAGCGGCTAGCGAGCCCAAGTTGAGGCAAGCGAAAAGCCGTAGTAAGAATGTGAATTCAAAGCATTTAGCAAACTCAGCTCAACGAGTTCAACAGGGAAAGGGACGGACTGAAGGCAGTAACAAACCAGGAGGAGGTGGAACAGTCAAAATTGAGAAGGAAAATTCTTTTTCTAGTTTGGAATCTGATTCAAGAAGCTCCAACTTCAAGCAAGGTGTTTTTTTGGTTACTAGTAATGGAAAACATAGTGGTAAGCCAAATGTTTACGATGGAGTTAATAGTGGTGAAGCACACACTAGTGAGCATTTCACTGAGGGAGTTGAAGGTGGTTATGGCAACGAAAATGTTGTTGAGGATGAAGATCTTTTACAAGAGAATTTGGGTACAAATTTGTCTTGGGATGTTGCAGAAGAAAAAAGTGTGAACAACCCATCTTCAGCCATTGAAGATCCCTTAATTGAATCAGTTAGTTGCCTTCAGGCTGTCCAGGAGGCACTTCAAGAAGAACTCCAGAAATTCAGGGAGATTGGGATTGAAGCCGTTTCACTAGATGATGACTCAGCCAAGTGTAGCAGTGCGTCTGCTGGTACTACTATTGATCTTGGACTTAATAAATCAAGCCAATCTGGTCAGTCTGGTGCAGAAGAAATTAAACAAACTGCTTCAAGTTCCTCAGATCCTCAGGTATTGAGCCTGACACAAAATATAAATATTTTGGAAAGCAAGTTGGAAGATTTACAGGGTGTGCTTGCTCTGAGGGACTCCAGGATTGCTGAACTTGAAACATCCTCGAGTAGTGTTAAGATTTCTAGGGAAGAGTCTGCTAGAACCGTAGATTCGTCGGATGAAAAATGTAAAGTGGTTGAGTCGGAGCTTGAGGACCTTTTTAGGCTAAGGATTGAAGCTGAGGTTGAATGCCTAGCCATCTCAAAGGTAATGCAGAACTTGAAGGATGGGGCAGTTTTCCATCAGACATTATTGGAAGAACAAGAGAAACTGTCCAAAAGTCAAGTGCAGGTTCTCAACAAGCTTGTAGATGCAGAGAGTAAGGCTTCAGTGCTGAAGAACAAAGCAGAAGAGTTGGAAAAATATTGTGGTGATAGTGTAGTAGTTGAGGAGTCTTTTGTGCTGCAGAGAAGAGTATGTAAGATGTCATTTTATCTTTTCATACAGTTTATGTTTTTAGTTTTGATCTTTTGGCTTTACATGTCACAGTTATCGCAAAATTCTGGGATGGTTGTACCCACGTAG

Predicted protein sequences of Glyma06g47971

Limit To All Plant Sequences

>Glyma06g47971.1   sequence type=predicted peptide   gene model=Glyma06g47971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLGSESVEENEVNHDGNGNGGSYDDDEIIGFGLEGNSDVNGSDQKGTVGEVEVGSSGEGVNSKGTPTKGFGLKKWKRIRRNVVKDPSSSVDSGKVLKRGLSGNANLSESQSFLRDVKEKSDGSSNMFGNVVFSDGNVIHGSSLDSRYALGSGFVVGTDSENSEDRSSKSSTAASEPKLRQAKSRSKNVNSKHLANSAQRVQQGKGRTEGSNKPGGGGTVKIEKENSFSSLESDSRSSNFKQGVFLVTSNGKHSGKPNVYDGVNSGEAHTSEHFTEGVEGGYGNENVVEDEDLLQENLGTNLSWDVAEEKSVNNPSSAIEDPLIESVSCLQAVQEALQEELQKFREIGIEAVSLDDDSAKCSSASAGTTIDLGLNKSSQSGQSGAEEIKQTASSSSDPQVLSLTQNINILESKLEDLQGVLALRDSRIAELETSSSSVKISREESARTVDSSDEKCKVVESELEDLFRLRIEAEVECLAISKVMQNLKDGAVFHQTLLEEQEKLSKSQVQVLNKLVDAESKASVLKNKAEELEKYCGDSVVVEESFVLQRRVCKMSFYLFIQFMFLVLIFWLYMSQLSQNSGMVVPT*

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