SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10100 | AT | Annotation by Michelle Graham. TAIR10: co-factor for nitrate, reductase and xanthine dehydrogenase 7 | chr4:6309091-6309381 FORWARD LENGTH=96 | SoyBase | E_val: 2.00E-36 | ISS |
| GO:0006777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0018315 | GO-bp | Annotation by Michelle Graham. GO Biological Process: molybdenum incorporation into molybdenum-molybdopterin complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG3474 | KOG | Molybdopterin converting factor, small subunit | JGI | ISS | |
| PF02597 | PFAM | ThiS family | JGI | ISS | |
| UniRef100_C6T427 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T427_SOYBN | SoyBase | E_val: 8.00E-66 | ISS |
| UniRef100_Q9S7A3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Molybdopterin synthase sulfur carrier subunit n=1 Tax=Arabidopsis thaliana RepID=MOC2A_ARATH | SoyBase | E_val: 8.00E-34 | ISS |
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Glyma06g47960 not represented in the dataset |
Glyma06g47960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g321300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g47960.3 sequence type=transcript gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATATATATATATACACGTGTGTGTGAGAATAAATGAATGAACCATTTCCATTTCTTACACCGTCAACACATCGCAATTCTGAATATGCTTGTGGTTGTACCAATAATTTTAAATTGAGAGTAAGGAGCTCCTATCATATTCTGCTCTGCTGTGATCTTTCTATGGTGACTTTCAATTGAGGGAAAGGGAATGGAAGGAGATATTAAGCTTTTGGATGGAGATGACACTCACAAAAAGAAAGAAAGTTCTCTGGTGAAGATAAAAGTATTGTTTTTCGCCAGAGCCCGTGATCTCACTGGCCTGAGTGAGTTGCCACTGGAGGTGTCATCTGGAAGTACTACTCATGATTGTTTGAAAAAGCTTTTTGTCAAGTTTCCAAGTTTGGAAGAAATAAGAGGCTGCATGGTTTTGGCTCTGAATGAGGAGTATACAACTGAGTCAACCATTGTTAAAGACACTGATGAGTTGGCCATAATTCCTCCAATAAGTGGTGGCTGAATCACTTAATATCACTGCATGGTACTTCTACTTTTGTAATCTAATACTGATTGATAAGTTAATATCTCATGTAGGGTAAATTTTATTGGTGGTGTGCAGTTCTCACTCAAGAGGTTAACCTTTCTCATCATACAATTAGGAGATTTCTACTAAGTTTTTGGATAACGGTTCAATCATGAAGTTAATTAAAAAATAATTTTAACAAAAAGGTTCAACCTTCGAGAACTCAAAACTCTGTAAAATTACCCTACCAGTAGATTGATTGTGATTTGTGAACTTCAATAAATGATTGTAATGCTAGATTTATTGTAAATGAACACCAGAAATTTTCTTGTTCTAGGGAAAATGAAGAATTTTCATTTGTCACTTCCTGTGGCACTTTATTTTAGCATTAAGGACAGTTTTCATGTCTTGAAATGGACAAAATATAATTTTACTAGTGATGGATGT >Glyma06g47960.4 sequence type=transcript gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATATATATATATACACGTGTGTGTGAGAATAAATGAATGAACCATTTCCATTTCTTACACCGTCAACACATCGCAATTCTGAAAGGGAATGGAAGGAGATATTAAGCTTTTGGATGGAGATGACACTCACAAAAAGAAAGAAAGTTCTCTGGTGAAGATAAAAGTATTGTTTTTCGCCAGAGCCCGTGATCTCACTGGCCTGAGTGAGTTGCCACTGGAGGTGTCATCTGGAAGTACTACTCATGATTGTTTGAAAAAGCTTTTTGTCAAGTTTCCAAGTTTGGAAGAAATAAGAGGCTGCATGGTTTTGGCTCTGAATGAGGAGTATACAACTGAGTCAACCATTGTTAAAGACACTGATGAGTTGGCCATAATTCCTCCAATAAGTGGTGGCTGAATCACTTAATATCACTGCATGGTACTTCTACTTTTGTAATCTAATACTGATTGATAAGTTAATATCTCATGTAGGGTAAATTTTATTGGTGGTGTGCAGTTCTCACTCAAGAGGTTAACCTTTCTCATCATACAATTAGGAGATTTCTACTAAGTTTTTGGATAACGGTTCAATCATGAAGTTAATTAAAAAATAATTTTAACAAAAAGGTTCAACCTTCGAGAACTCAAAACTCTGTAAAATTACCCTACCAGTAGATTGATTGTGATTTGTGAACTTCAATAAATGATTGTAATGCTAGATTTATTGTAAATGAACACCAGAAATTTTCTTGTTCTAGGGAAAATGAAGAATTTTCATTTGTCACTTCCTGTGGCACTTTATTTTAGCATTAAGGACAGTTTTCATGTCTTGAAATGGACAAAATATAATTTTACTAGTGATGGATGT
>Glyma06g47960.2 sequence type=CDS gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGAGATATTAAGCTTTTGGATGGAGATGACACTCACAAAAAGAAAGAAAGTTCTCTGGTGAAGATAAAAGTATTGTTTTTCGCCAGAGCCCGTGATCTCACTGGCCTGAGTGAGTTGCCACTGGAGGTGTCATCTGGAAGTACTACTCATGATTGTTTGAAAAAGCTTTTTGTCAAGTTTCCAAGTTTGGAAGAAATAAGAGGCTGCATGGTTTTGGCTCTGAATGAGGAGTATACAACTGAGTCAACCATTGTTAAAGACACTGATGAGTTGGCCATAATTCCTCCAATAAGTGGTGGCTGA >Glyma06g47960.3 sequence type=CDS gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGAGATATTAAGCTTTTGGATGGAGATGACACTCACAAAAAGAAAGAAAGTTCTCTGGTGAAGATAAAAGTATTGTTTTTCGCCAGAGCCCGTGATCTCACTGGCCTGAGTGAGTTGCCACTGGAGGTGTCATCTGGAAGTACTACTCATGATTGTTTGAAAAAGCTTTTTGTCAAGTTTCCAAGTTTGGAAGAAATAAGAGGCTGCATGGTTTTGGCTCTGAATGAGGAGTATACAACTGAGTCAACCATTGTTAAAGACACTGATGAGTTGGCCATAATTCCTCCAATAAGTGGTGGCTGA >Glyma06g47960.4 sequence type=CDS gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGAGATATTAAGCTTTTGGATGGAGATGACACTCACAAAAAGAAAGAAAGTTCTCTGGTGAAGATAAAAGTATTGTTTTTCGCCAGAGCCCGTGATCTCACTGGCCTGAGTGAGTTGCCACTGGAGGTGTCATCTGGAAGTACTACTCATGATTGTTTGAAAAAGCTTTTTGTCAAGTTTCCAAGTTTGGAAGAAATAAGAGGCTGCATGGTTTTGGCTCTGAATGAGGAGTATACAACTGAGTCAACCATTGTTAAAGACACTGATGAGTTGGCCATAATTCCTCCAATAAGTGGTGGCTGA
>Glyma06g47960.2 sequence type=predicted peptide gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDIKLLDGDDTHKKKESSLVKIKVLFFARARDLTGLSELPLEVSSGSTTHDCLKKLFVKFPSLEEIRGCMVLALNEEYTTESTIVKDTDELAIIPPISGG* >Glyma06g47960.3 sequence type=predicted peptide gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDIKLLDGDDTHKKKESSLVKIKVLFFARARDLTGLSELPLEVSSGSTTHDCLKKLFVKFPSLEEIRGCMVLALNEEYTTESTIVKDTDELAIIPPISGG* >Glyma06g47960.4 sequence type=predicted peptide gene model=Glyma06g47960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDIKLLDGDDTHKKKESSLVKIKVLFFARARDLTGLSELPLEVSSGSTTHDCLKKLFVKFPSLEEIRGCMVLALNEEYTTESTIVKDTDELAIIPPISGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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