Glyma06g47940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g47940

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50314540
stop:	50318761
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56220	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:22754871-22757792 FORWARD LENGTH=973	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_B9GHK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tir-nbs resistance protein n=1 Tax=Populus trichocarpa RepID=B9GHK5_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A144	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A144 related cluster n=1 Tax=unknown RepID=UPI000233A144	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47940

Paralog	Evidence	Comments
Glyma04g12660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g321200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g47940

Limit To All Plant Sequences

>Glyma06g47940.1   sequence type=CDS   gene model=Glyma06g47940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGTGAAAGAGAGGACAACAACCACCGAGGCACCAATGCAACACACACTGCAATCTCTAGCACACTTAAAATTAAGATTGCAAGCAGCAACAAACAAGGTGAGGGGAGTTTAGACAACTCAAACTTACCTTCACCAAACATAAACAATACCACAGAATCATCTCCTTATGGCTCTCCTCTTGTGTCCCCACCTTCTTCAGCATTTGTTTCAGCATTGCAGTCTCCATATATATCTCCAAGGGCCATAATCCCAGACCCACCTAATGGTTCTTCTCCTTTGGAAAACCAACCATCACTACCAACAACAACAACAACAACAACAACCACTTCCACCCCAGAAGATGTGCCTAGCAGTTCCTATACCCCCCCTTCTGATCAATATGAGTTCTCTGATGACACTGCTGACACAAGGCTCAAATATGTGACATGTGTTCCTGAAGCAGCTCCTGAACGCATCTCATTCTCATTTCAAGTCCCCAGAATTTCTTTTGCAAAAGGTGCTATCTCACCTGCTTCCAATGCTAAACTAAGAAGCTGTGATGTTTACATTGGATTCCATGGCCAGAACCCCAACTTGGTGCGCTTCTGCAAGTGGCTTAAGTCTGAGCTTGAGCTTCAAGGGATTGATTGCATGCTTGCTGATAGAGGAAAGTACTCAGACAGTCAGAGCCATGAGATTGCTGATAGAGTCATTTGCTCGGTGGCATTTGGAGTGGTGGTTGTTACAAGTTCCAGCTTCCTCAACCATTATACCATGGAGGAGGTGAGATTCTTTGCTCAAAAAAAGAACTTGATCCCTCTCTTGTTTGATACAGGAACTTCTGAGATTATGTCTCTTCTTAACTGCAACTCTATTGACAAAGAATGTAAAGAGGCAATTGATGGACTAATGAAGTGCAATGAGTTGAATCTAGAGGCCAATGATGGTAACTGGCGAAGCTGCATAGCGAAAGCTGCTGGCATCTTAAGAGCAAGACTTGGTAGGAAGAATACTGAGCAGAAGGATAATATGCAAGGATTTGAGAGTTTACCTTTCCCAAGGAACACATATTTTGTAGGAAGAGAGAAGGAGATCATGGAGATTGAAGGCCTTTTTTTCGGTCGAGGGAATTGCATGGAACAAGTCCAAGATCATTGTAGGGCATTCACCAAAGGAGAAGCTAGTGGAAGTGGACAATCTGAAGGCCTTGCAGATGAGGAAAGTGAGCCAGTAATAGGTAGGTGTGGAAGGTATATTAGTCTAGAGATGGGGAGGTGCAAAGAGCCAACTTTAGAGGCTTGGGTTGAACCAACCATAGGAAACAATTCTGTGAAGAGGTTGAAGAATAAGAAGGCAAAGAGTGGAAACTGCAAGAGCTTGTGTAGCAGTGTGATTTGCATTAATGGAGTTTCTGGGATTGGAAAGTCTGAGCTGGCACTAGAATTTGCTCATAGATATCACCAGAAGTACAAAATGGTCTTGTGGGTTGGTGGTGAAGCCAGGTATCTTAGGCAGAACTTATTGAATTTGTCTCTCAATTTGGGATTGGATGTTGGTGCTGATTCTGAGATTGAAAGAGGTCGGATTCGTAGCTTTGAGGAGCAAGAATTTGAAGCATTCAAGAGAGTCAAGAGGGAACTGTTTGGTGAGACTCCTTACTTGCTGATAATTGATAATCTTGAGACAGAAGTGGAATGGTGGGAAGGGAAAGATCTATATGACTTGATACCAAGAAACACAGGAGGGACACATGTGATTGTTACTACTAGGTTGTCCAAAGTAATGAGCTATGATACTATTCAGCTTCTTCCTTTGCCATTATCTGATGCAATGATTCTGATGATAGGAAGAAAAATGAAAGATTATCCAGCAGATGAGATAGACATCCTTGAAAAATTCAATGAGAAACTTGGAAGGTTGAGCTTTGGCTTGTGGATGATTGGTTCATTACTGTCTGAACTTGCAATAGGCCCTTCTTCTCTCTTTGAGGCCATAAACCAGGTGTCACTCATTGAAGATTCAAACTCTTGCTATATGAGCATTGCAGAAGGGCAATGGTGCAAGAGCAACCCTTTTCTCATGAAGACCCTCCTCTTTTGTTTGGAGACTTTGGAAAAAACAAAAGGTAAAGGGAACATCTTGGCCATAAGAATGCTGCTTGTGAGTGGCTGGTTTTCCCCTGCTCCCATTTCAGCCAGTTTATTAGCCAATGCAGCAAAGAGTATTCCTATGGTTGAAAACCGTCTCAAGAAGTGGACCAAATCTCTGAGCCTAACACCTAGTTGTTTATCATCGCGGTCGTGGAAAAACGAAGAAGATTCAGCAATGCTTCTTGTGAAAATGGGACTGGCCAGATGGGCTAATCAACATGATGGATGCTGGCTTAATTTCCACCCCATAACGCAAGCATTCGCCAAAAGAAAAGGCAGTTTGCAGTATGCCAAAGCCGCAATTCAAGGAGTGAGAAAAATGGGCAGCCATGTGAACTCAGATCACTTATGGACCTCAGCTTTCCTTGTGTTTGGGTTCAAATCTGAGCCTCCACTTGTGCAGCTGAAGGCAATTGACATGGTTTTGTACATCAAGAGAACAGCTCTCCCCTTAGCAATTCAAGCCTTCACCACTTTCTCAAGATGCAATTCATCCTTGGAGCTCCTAAGGGTGTGCACCAATGCACTGGAGGAAGTTGAGAAGTCCTTTGTCTCTCAAATCCAAGATTGGTCCTCACATAATTCAATCTGTTGGAAAAGGAGGCTGCAAAGAGGCCAAAAAGTGGATGAATATGTGTGGCAGGATGTGACCTTGTTGAAGGCAACACTGCTGGAGACAAGAGCGAAGTTGCTAGCAAGAGGGGGCCATCTAGACAGTGCCAAGGAACTGTGCAGAACATGCATCAGTATCAGAACTGTGATGCTTGGCCACAACCATGCACAGACCTTGGCAGCTCAAGAGACATTGACAAGGTTGGTGAGAATGAGGAGTAAGATATGA

Predicted protein sequences of Glyma06g47940

Limit To All Plant Sequences

>Glyma06g47940.1   sequence type=predicted peptide   gene model=Glyma06g47940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSEREDNNHRGTNATHTAISSTLKIKIASSNKQGEGSLDNSNLPSPNINNTTESSPYGSPLVSPPSSAFVSALQSPYISPRAIIPDPPNGSSPLENQPSLPTTTTTTTTTSTPEDVPSSSYTPPSDQYEFSDDTADTRLKYVTCVPEAAPERISFSFQVPRISFAKGAISPASNAKLRSCDVYIGFHGQNPNLVRFCKWLKSELELQGIDCMLADRGKYSDSQSHEIADRVICSVAFGVVVVTSSSFLNHYTMEEVRFFAQKKNLIPLLFDTGTSEIMSLLNCNSIDKECKEAIDGLMKCNELNLEANDGNWRSCIAKAAGILRARLGRKNTEQKDNMQGFESLPFPRNTYFVGREKEIMEIEGLFFGRGNCMEQVQDHCRAFTKGEASGSGQSEGLADEESEPVIGRCGRYISLEMGRCKEPTLEAWVEPTIGNNSVKRLKNKKAKSGNCKSLCSSVICINGVSGIGKSELALEFAHRYHQKYKMVLWVGGEARYLRQNLLNLSLNLGLDVGADSEIERGRIRSFEEQEFEAFKRVKRELFGETPYLLIIDNLETEVEWWEGKDLYDLIPRNTGGTHVIVTTRLSKVMSYDTIQLLPLPLSDAMILMIGRKMKDYPADEIDILEKFNEKLGRLSFGLWMIGSLLSELAIGPSSLFEAINQVSLIEDSNSCYMSIAEGQWCKSNPFLMKTLLFCLETLEKTKGKGNILAIRMLLVSGWFSPAPISASLLANAAKSIPMVENRLKKWTKSLSLTPSCLSSRSWKNEEDSAMLLVKMGLARWANQHDGCWLNFHPITQAFAKRKGSLQYAKAAIQGVRKMGSHVNSDHLWTSAFLVFGFKSEPPLVQLKAIDMVLYIKRTALPLAIQAFTTFSRCNSSLELLRVCTNALEEVEKSFVSQIQDWSSHNSICWKRRLQRGQKVDEYVWQDVTLLKATLLETRAKLLARGGHLDSAKELCRTCISIRTVMLGHNHAQTLAAQETLTRLVRMRSKI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain