Glyma06g47910 - SoyBase

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Report for Sequence Feature Glyma06g47910

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50283201
stop:	50294399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55620	AT	Annotation by Michelle Graham. TAIR10: chloride channel F \| chr1:20787338-20790990 REVERSE LENGTH=781	SoyBase	E_val: 0	ISS
GO:0006821	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloride transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005247	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chloride transport	SoyBase	N/A	ISS
KOG0475	KOG	Cl- channel CLC-3 and related proteins (CLC superfamily)	JGI		ISS
PTHR11689	Panther	CHLORIDE CHANNEL	JGI		ISS
PTHR11689:SF49	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
PF00654	PFAM	Voltage gated chloride channel	JGI		ISS
UniRef100_B9ST82	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Voltage-gated clc-type chloride channel, putative n=1 Tax=Ricinus communis RepID=B9ST82_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KFU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFU7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47910

Paralog	Evidence	Comments
Glyma04g12729	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g320900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g47910

Limit To All Plant Sequences

>Glyma06g47910.1   sequence type=CDS   gene model=Glyma06g47910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAGAGCGATCAGCGTCGTCTTCTCGGGGCTTCCGAGGATGACGTGGAGTCTGGAGGGTCGGAATTGGCTTTGGCGGTCGTCAATGGCAGCAGTGGCAACAACAACAACAACAACAAAGGTTTTAGGGATTTGTTAAGGTTGTCGGGTCACCGACACAGTTTGAAGCGCATTGAGAAAGAAGAAGATAGAGATAGAGACAGGGATAGGGGTATAGATAGAGATAGAAGAGATCAAAATCGGCATCTCCACGATGTGGATCTTGATTCTTCTGTTGATGTGCTTGGGGACAGTGCACCTCCTGAATGGGCGTTGCTTCTTATTGGTTGCCTCATTGGACTCACCACTGGGCTATTTGTGGCACTTTTCAATAAAGGGGTGCATGTAATACATGAATGGGTATGGGCTGGTACTCCAGTTGAAGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTTGGCATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACTTCCTCTCAAACACAAGGATTTGATTTTCTTGCAGGAATCTTTCCAACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACTGGGTGTTCATTGGGTCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAATGGATTCTCACTAATGATGGAACACGACAGAGAAAGGAAAATAGCACTTGTTGCGGCTGGTGCAGCAGCTGGTATTTCTTCAGGCTTCAATGCTCCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTTCGTGCAGAGAACTCACCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCGTCAACTGTATCTAATGTTTTACAGGGGACCCAATCAGCTTTTACAATACCCGAGTATGATTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTATGTGGTGTTATAAGTGTGGCCCTGACTCGTTTGGTTGCTTGGTTCACCAAATTATTTAAGATTATTCAAGATAAGTTTGGCATTCCTACCGTGGTCTGCCCTGCTTTAGGTGGCTTTGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTCTACGTACTGGAAAGAGTGCTTCAGCTCCTGGAATATGGCTTCTGGCTCAATTGGTAGCTGCTAAGGTTATTGCAACGGCTCTTTGCAAGGGATCTGGGCTAGTAGGTGGTCTTTATGCACCGAGTTTAATGATAGGTGCCGCAGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAGTTATTAATTCAGCAATTCCTGGAAATACTGCTGTTGCTCAGCCCCCAGCATATGCTCTGGTTGGAATGGCTGCTACACTAGCATCTGCTTGTTCTGTTCCTTTGACATCGGTTCTACTTCTTTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTACCCTCAGTGACAAACCGGGTGAAGGAGAGTGAGACACCTGATTCAAGTAAATCAGCAAGAGGATACTCTCCAATTTCACATGCCGGATATGATAATGAAGATAACTGGAGACAAGCCAATGATGGGAATGATTTAGAACTCCGTATTGTTGATGGCACTAATCTTGAACCAATTGATAAGGAACTGCTTCTGGACAATCTTCAGGTTTCTCAGGCCATGTCAAAACAATATCTGAAGGTTTTGTCATCTGCAACCCTGAAAGATGCAATAAAATGCATGCATGACAGCCAGCAGAATTGTGTGCTGGTGGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACAGATGGTGACGTTAAAAGGTGTCTGTCCCAGAAGTCTAATGACACTTCGAATGGCGATTCAGGGATTGTGGATGCAAACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGAGCGAGGAATCTTAACCTGCTATCCAAATACTAGTTTGGCTATGGCCAAAGAGTTGATGGAGGCCAAGGACATTAAGCAATTACCAGTGGTTAAACGTGGTGTAGATCACAGTAGAGAAATGAAGAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGATATTAATCACAGGCAGACAGCCCATCAAAATAGGACAGATAACAATTTGGCTGTGAAAACAACAAATGGGCACTAA

Predicted protein sequences of Glyma06g47910

Limit To All Plant Sequences

>Glyma06g47910.1   sequence type=predicted peptide   gene model=Glyma06g47910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSESDQRRLLGASEDDVESGGSELALAVVNGSSGNNNNNNKGFRDLLRLSGHRHSLKRIEKEEDRDRDRDRGIDRDRRDQNRHLHDVDLDSSVDVLGDSAPPEWALLLIGCLIGLTTGLFVALFNKGVHVIHEWVWAGTPVEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTSSQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHDRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGTQSAFTIPEYDLKSAAELPLYLILGMLCGVISVALTRLVAWFTKLFKIIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLAQLVAAKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNTAVAQPPAYALVGMAATLASACSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNRVKESETPDSSKSARGYSPISHAGYDNEDNWRQANDGNDLELRIVDGTNLEPIDKELLLDNLQVSQAMSKQYLKVLSSATLKDAIKCMHDSQQNCVLVVDKEDFLEGILTDGDVKRCLSQKSNDTSNGDSGIVDANTCLVSSVCTRGMSYRGRERGILTCYPNTSLAMAKELMEAKDIKQLPVVKRGVDHSREMKRRIVGLLHYDALWQCLRKDINHRQTAHQNRTDNNLAVKTTNGH*

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