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Report for Sequence Feature Glyma06g47890

Feature Type:gene_model
Chromosome:Gm06
Start:50276299
stop:50278680
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g47890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16520AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 88A1 | chr3:5619355-5620833 REVERSE LENGTH=462 SoyBaseE_val: 6.00E-126ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0080043GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080044GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 7-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080045GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3'-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080046GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 4'-O-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_E9M5F8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase GT19J14 n=1 Tax=Pueraria montana var. lobata RepID=E9M5F8_PUEML SoyBaseE_val: 0ISS
UniRef100_UPI0002339304UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339304 related cluster n=1 Tax=unknown RepID=UPI0002339304 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g47890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g47890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g320800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g47890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g47890
>Glyma06g47890.2   sequence type=CDS   gene model=Glyma06g47890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAGAAGACACAGTAGTGTTGTATCCAGCCCCAGGCATAGGCCACATTGTATCCATGGTTGAGCTTGCTAAGCTTCTCCAATTACATGCTCATTCAATCACAATTCTTCTCACCACGGGTCTCCTTGACCACCCCTCTATCGACACCTACATACACCGAATCTCCATCTCTCACCCTTCCATCTTCTTCCACCGCCTCCCCCACACATCACTCTCCACCACCACCACCGTGAGCATGGCCGCCAAAGCCTTCAACTTCATCAACATAAACACCCCCAACGTAGCCACCACCCTCACCCAAATCACCAAATCCACCAATATCAAAGCCTTCATAATCGATCTCTTCTGCACCTCCGCAATGGAACCGGCTTCTTCATTGGGAATCCCCGTCTACTACTTCTTCACCTCCGGCGCCGCCGTTCTCTCGCTTTTCTCTTACTTTCCAAAACTCCACCAAGAGACCCACGTGTCGTTTAAGGATATGGTCGGGGTAGAACTGCGCGTGCCGGGCAACGCGCCGCTGAGGGCCGTGAACATGCCGGAGCCAATGTTGAAGAGGGACGACCCTGCTTACTGGGACATGCTGGAGTTCTGCACGCGCCTTCCGGAGGCGCGTGGGATCATCGTGAACTCGTTTGAAGAGCTGGAGCCTGTGGCGGTTGATGCCGTTGCGGACGGCGCGTGCTTTCCAGACGCGAAACGTGTGCCTGGTGTGTACTACATAGGACCACTCATCGCTGAACCCCAACAATCAGATGTAACAACGGAGAGTAAACAATGTTTGTCATGGCTTGATCAACAACCAAGTAGAAGCGTGGTGTACCTGTGTTTTGGAAGCCGTGGATCGTTCTCAGTGTCACAACTGAGAGAAATAGCAAATGGGTTGGAGAAGAGTGGCCACAGTTTCTTATGGGTTGTGAAGAGGCCAACACAAGACGAAAAAACAAAGCAGATTCACGACACAACAACAACAACAACAACAATGGATTTCGATTTGAGTTCGGTGTTGCCAAGTGGGTTCATCGAGAGAACCAAGGACAGGGGCCTGGTGGTGAGCTCGTGGGCCCCACAAGTGGAGGTGCTGAGCCGCGGCTCGGTGGCTGCGTTCGTGAGTCACTGCGGGTGGAACTCGGTGCTGGAAGGGGTGGTTGCCGGGGTGCCAATGGTTGCATGGCCGCTGTACGCGGAGCAGCACGTGAACATGCACGTGATGGTGGGTGAGATGAAGGTGGCTGTTGCGGTGGAGCAAAGGGAAGAAGATGGGTTCGTGAGTGGGGAGGAAGTGGAGAAGAGAGTGAGGGAGGTGATGGAGTCAGAGGAGATTAGGGAGAGGAGTTTGAAGCTGAAAGAGATGGCTTTGGCTGCAGTTGGGGAATTTGGATCCTCTAAAACAGCACTTGCAAATTTGGTTCAATCATGGACTACTCATGTGTAA
Predicted protein sequences of Glyma06g47890
>Glyma06g47890.2   sequence type=predicted peptide   gene model=Glyma06g47890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQEDTVVLYPAPGIGHIVSMVELAKLLQLHAHSITILLTTGLLDHPSIDTYIHRISISHPSIFFHRLPHTSLSTTTTVSMAAKAFNFININTPNVATTLTQITKSTNIKAFIIDLFCTSAMEPASSLGIPVYYFFTSGAAVLSLFSYFPKLHQETHVSFKDMVGVELRVPGNAPLRAVNMPEPMLKRDDPAYWDMLEFCTRLPEARGIIVNSFEELEPVAVDAVADGACFPDAKRVPGVYYIGPLIAEPQQSDVTTESKQCLSWLDQQPSRSVVYLCFGSRGSFSVSQLREIANGLEKSGHSFLWVVKRPTQDEKTKQIHDTTTTTTTMDFDLSSVLPSGFIERTKDRGLVVSSWAPQVEVLSRGSVAAFVSHCGWNSVLEGVVAGVPMVAWPLYAEQHVNMHVMVGEMKVAVAVEQREEDGFVSGEEVEKRVREVMESEEIRERSLKLKEMALAAVGEFGSSKTALANLVQSWTTHV*






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