Glyma06g47880 - SoyBase

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Report for Sequence Feature Glyma06g47880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50268079
stop:	50273192
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56270	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 2 \| chr5:22780816-22783137 FORWARD LENGTH=687	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009942	GO-bp	Annotation by Michelle Graham. GO Biological Process: longitudinal axis specification	SoyBase	N/A	ISS
GO:0030010	GO-bp	Annotation by Michelle Graham. GO Biological Process: establishment of cell polarity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_D9ZJG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJG2_MALDO	SoyBase	E_val: 0	ISS
UniRef100_I1JVP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVP2_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma06g47880

Locus	Gene Symbol	Protein Name
	WRKY59	WRKY Transcription Factor

Expression Patterns of Glyma06g47880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47880

Paralog	Evidence	Comments
Glyma04g12830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g320700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g47880

Limit To All Plant Sequences

>Glyma06g47880.3   sequence type=CDS   gene model=Glyma06g47880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGATTGATGATAATGTTGCCCTTACTGGTGATTGGGGTCTTGCTAGCCCAAGTCCAAGGACCTTTTTTTCCAGAATGTTAGAAGAAGATAGTGTGACAAGATCAATCTCAGAACATTCTGGAAGTGGTAGAACTGGGGATCCCTTTTCGGGACATCGCGAGCCTAGTGAGATGAGGAAAGAAAACATGAAAGATAGGGCACAGGATGGTGATTCTGGAGCCCAATTGACTGACGTGAGTTTTCAGACCGAGCAGAAGCCGAGCTCTCGGGGTGGTCTTGTTGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCGAGGTTGAATACAGAAAGCATTAGATCTACTGACCTTTCACTTAATTCCGACATTCAGTCTCCTTACTTGACCATCCCACCTGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACCGGAAAGTTCCTGTTCATGGTTAATGGCAACATGCGGCACTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAACACAATGGCTTTGATGATATCTACACATCATCCTTTGCTTTCAAGCCTGCAACAGATTCAGGCTCCTCTTTTTATCATGGTGCTGGAAGAAAAATAAATCCAACTACACTTCCTCAACAATCCCTTCCTGGTGTTGAGGTTTCGGCTCAGTCTGAAAATTCTTTTCAATGTCAAAGTGTTGATGCTGTCAAAGCTCAAACTGAGAACAAAAGTGGCCTTCATCTTCAGGAAGACTTTGTTGAATCGCCTCCTCAAAAAGATAATGGAATTAAAATGTTCTCAGCCAATCAAAGGGCTTTTCATGCTGTTGGCAGTGGCATTGAACATTCTACACCAGTTGAAGAGCAAGCAGATGAAGAAGGAGATCAAAGAGTCAATGGAGATTCAATGGCTGGTGGTGTTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTGAAGGGCAGCGAGTACCCACGGAGTTACTACAAGTGTACTCATCCGAACTGTCAGGTTAAGAAGAAAGTAGAACGATCTCATGAGGGCCACATAACTGAGATCATCTACAAGGGAACGCACGACCATGCAAAACCTCCTCCAAATCGCCGGTCAAGTATAGGTTCGGTTAACCTTCATACTGACATGCAAGTGGACAACCCTGAACACGTTGAACCACACAATGGTGGTGATGGTGACTTGGGCTGGGCTAATGTACAAAAGGGAAATATAGCTGGAGCTGCTAATTGGAAGCATGAAAACATTGAAGCCACATCATCAGCATCTGTTGGCCCTGAATACTGCAACCAGTCCCCCAATTTGCAGGCTCAAAATGGTACTCACTTAGATTCAGGAGAGGCGGTGGATGCCTCATCTACTTTTTCTAATGAAGAAGACGATCAAGTCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCTGAGTCTAAGAGAAGGAAACTGGAATCATATGCAGAGTTGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACGAATGCAGGGTGCACGGTCAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTAATCACAACATACGAGGGAAAACATAACCATGATGTTCCTGCTGCTCGTGCCAGCAGTCACGTCAACGCTAATGCTTCCAATGCCGTTCCTGGCCAAGCTTCTCTTCAGACTCATGTTCATAGACCCGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTTGAGAGGCCTTCTCTTGGCTCATTCAACCTACCCGGGAGGCAGCAACTAGGACCATCCCATGGCTTCTCCTTTGGTATGAACCAATCCATGCTATCAAATCTGGTGATGTCAGGGTTAGGCCACGCGCAAGCAAAGCTTCCTGTCATGCCTGTTCATCCGTTCTTGGCAGCGCAACAACAACATCAACAGCGACAACAACATCAACAGCAGCAGCAACATCAACAGCAGCAGCAACAACATCAACAGCAACAGCAACATCAACAACAACAATGCGCTGCAAATGATTTGGGTTTCATGTTGCCAAAGGGAGAGCCAAATGTGGAGGCTATTCCTGAACATGGTGGCCTTAACCTGTCAAATGGCTCATCAGTGTACCAAGAAATGATGAGTCGCATGCCTCTTGGACCTCATATGTAA

Predicted protein sequences of Glyma06g47880

Limit To All Plant Sequences

>Glyma06g47880.3   sequence type=predicted peptide   gene model=Glyma06g47880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGIDDNVALTGDWGLASPSPRTFFSRMLEEDSVTRSISEHSGSGRTGDPFSGHREPSEMRKENMKDRAQDGDSGAQLTDVSFQTEQKPSSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMVNGNMRHSELSSDAPEKCKHNGFDDIYTSSFAFKPATDSGSSFYHGAGRKINPTTLPQQSLPGVEVSAQSENSFQCQSVDAVKAQTENKSGLHLQEDFVESPPQKDNGIKMFSANQRAFHAVGSGIEHSTPVEEQADEEGDQRVNGDSMAGGVGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHDHAKPPPNRRSSIGSVNLHTDMQVDNPEHVEPHNGGDGDLGWANVQKGNIAGAANWKHENIEATSSASVGPEYCNQSPNLQAQNGTHLDSGEAVDASSTFSNEEDDQVTHGSVSLGYDGEGDESESKRRKLESYAELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNAVPGQASLQTHVHRPEPSQVHNGIGRLERPSLGSFNLPGRQQLGPSHGFSFGMNQSMLSNLVMSGLGHAQAKLPVMPVHPFLAAQQQHQQRQQHQQQQQHQQQQQQHQQQQQHQQQQCAANDLGFMLPKGEPNVEAIPEHGGLNLSNGSSVYQEMMSRMPLGPHM*

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