Report for Sequence Feature Glyma06g47670
Feature Type: gene_model
Chromosome: Gm06
Start: 50069409
stop: 50074324
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g47670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G25240 AT
Annotation by Michelle Graham. TAIR10: SKU5 similar 1 | chr4:12930539-12933563 FORWARD LENGTH=589
SoyBase E_val: 0 ISS
GO:0009165 GO-bp
Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0031225 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane
SoyBase N/A ISS
GO:0046658 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG1263
KOG
Multicopper oxidases
JGI ISS
PTHR11709 Panther
MULTI-COPPER OXIDASE
JGI ISS
PTHR11709:SF18 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00394 PFAM
Multicopper oxidase
JGI ISS
PF07731 PFAM
Multicopper oxidase
JGI ISS
PF07732 PFAM
Multicopper oxidase
JGI ISS
UniRef100_G7IYH4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Monocopper oxidase-like protein SKS1 n=1 Tax=Medicago truncatula RepID=G7IYH4_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KFS4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFS4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g47670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g47670
Paralog Evidence Comments
Glyma04g13670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g47670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g318800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g47670
Coding sequences of Glyma06g47670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g47670.1 sequence type=CDS gene model=Glyma06g47670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGATGGTTCTGTCTGGGTTCTCTCTGCTGCTGCACATTGCTCTGCTTGCAAGACTCTGTTTTGGAGGCGACCCAACTGTTTTCACTGAACTTCGCGTCTCATACACCACCGTTACTCCTCTGGGTGTTCCTCAGCAGGTTATAGCTATCAACAAGAAGTTTCCAGGACCTGTCATCAATGTTACAACCAATAACCATGTAATTGTGAATGTGTTCAATGAATTGGATGAAGATCTTCTCATTTCATGGTCGGGGGTTCAAATGCGACGTAACTCATGGCAAGATGGAGTCCTTGGCACAAATTGTCCAATTCCTCCCAATTGGAATTGGACATATCAGTTCCAAGTCAAGGATCAAATTGGAAGTTTCTTTTACTTCCCTTCTCTTGGTTTCCAAAGAGCCTCTGGTGGCTTTGGTCCCTTTGTTATCAATAATAGAGAAATTATTCCAATTCCTTTTGCGCGGCCAGATGGAGAGATTTTCATTATGGTTGGTGATTGGTACACTCAGAACCACACGGCCCTAAGAGCAACTCTTGATGGTGGAAAAGACCTTGGGATACCAGATGGTGTTCTCATCAATGGGAAGGGACCTTTCCAGTACAACACTACTCTTGTTCCTGGTGGCATCAATTATGAAACAATTACCGTTGATCCAGGCAAGACTTATCGAATTCGTGTCCACAATGTGGGAATCTCAACTTCTTTGAATTTCCGAATTCAAGATCATAATCTACTGTTGGTGGAGACTGAGGGGCATTACACAACTCAAACAAATTTCACCAGCTTTGATATTCATGCTGGCCAGTCATACTCTTTTCTGCTTTCCACTGACCAAAATGCAAGTACAGACTACTATATTGTTGCAAGTGCCAGGTTTGTGAATGAATCATTGTGGGAGAAGGTTACAGGTGTTGCAATTTTACACTATTCAAATTCCAAGGGACCAGCAATTGGTCCTCTGCCTCCCCCTCCAAGTGATTTTTATGACAAGACAGCTTCAATGAACCAAGCAAGAAGTGTCAGACAAAATACATCTGCTAGTGGTGCTCGTCCTAATCCTCAAGGATCCTTTCATTATGGCTCCATCAATGTAACTGATACTTATGTGTTAAAGGTTATGTCCCTGGCGCCAATCAATGGTACAAATCGAGCTACTATTAATGGGATCTCATTTCTCAAGCCTGAGGTTCCATTCCGGCTTGCTGACAAGCATCAATTAAGAGGAACATATAAGCTTGATTTTCCCAGCAAGCCAATGAACAGGACCCCAGTAATTGACAGATCAATGATCAACGCTACATATAAGGGATTCATTGAGATTATATTGCAAAACAATGACTCCTCTATTCAAAACTTTCATCTGGATGGTTACTCCTTTTTTGTAGTTGGGATGGATTATGGTGATTGGTCAGAAAATTCTAGAGGTTCTTATAACAAGTGGGATGCAATATCTCGCAGCACAACTCAGGTTTTTCCTGGAGGATGGACAGCAATCCTTATATCGCTCGACAATGTTGGATCATGGAACCTGAGAGCAGAAAACCTGGACAGGTGGTACCTAGGTCAAGAAACTTATCTGAAGATCGTCAATCCGGAAGAAAATGGTGACACCGAGATGGCTGCACCAGATAATGTTCTATATTGTGGTCCCCTCAAGAGCTTGCAGAAGTCGAATTCTACTTTTTCTGCAGCTTCTACTTTGGGACATAGCTTGAACCTTTTCTCATTGCTCCTGGGACTTTTTGCTATTATTCTCTTCCTAGCTAGATAA
Predicted protein sequences of Glyma06g47670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g47670.1 sequence type=predicted peptide gene model=Glyma06g47670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMVLSGFSLLLHIALLARLCFGGDPTVFTELRVSYTTVTPLGVPQQVIAINKKFPGPVINVTTNNHVIVNVFNELDEDLLISWSGVQMRRNSWQDGVLGTNCPIPPNWNWTYQFQVKDQIGSFFYFPSLGFQRASGGFGPFVINNREIIPIPFARPDGEIFIMVGDWYTQNHTALRATLDGGKDLGIPDGVLINGKGPFQYNTTLVPGGINYETITVDPGKTYRIRVHNVGISTSLNFRIQDHNLLLVETEGHYTTQTNFTSFDIHAGQSYSFLLSTDQNASTDYYIVASARFVNESLWEKVTGVAILHYSNSKGPAIGPLPPPPSDFYDKTASMNQARSVRQNTSASGARPNPQGSFHYGSINVTDTYVLKVMSLAPINGTNRATINGISFLKPEVPFRLADKHQLRGTYKLDFPSKPMNRTPVIDRSMINATYKGFIEIILQNNDSSIQNFHLDGYSFFVVGMDYGDWSENSRGSYNKWDAISRSTTQVFPGGWTAILISLDNVGSWNLRAENLDRWYLGQETYLKIVNPEENGDTEMAAPDNVLYCGPLKSLQKSNSTFSAASTLGHSLNLFSLLLGLFAIILFLAR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
