Glyma06g47640 - SoyBase

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Report for Sequence Feature Glyma06g47640

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50038162
stop:	50043689
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62660	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 32 protein \| chr1:23199949-23203515 FORWARD LENGTH=648	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0071370	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004564	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity	SoyBase	N/A	ISS
GO:0004575	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity	SoyBase	N/A	ISS
KOG0228	KOG	Beta-fructofuranosidase (invertase)	JGI		ISS
PF00251	PFAM	Glycosyl hydrolases family 32 N-terminal domain	JGI		ISS
PF08244	PFAM	Glycosyl hydrolases family 32 C terminal	JGI		ISS
PF11837	PFAM	Domain of unknown function (DUF3357)	JGI		ISS
UniRef100_I7FEP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Soluble acid invertase n=1 Tax=Litchi chinensis RepID=I7FEP8_LITCN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A139	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A139 related cluster n=1 Tax=unknown RepID=UPI000233A139	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g47640 not represented in the dataset	Glyma06g47640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g47640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g318500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g47640

Limit To All Plant Sequences

>Glyma06g47640.3   sequence type=transcript   gene model=Glyma06g47640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATCATCAAATGGTACCTTCTATATATCCTCCAAAACATGTATTTTCATTTACTTTCCATTTTGTCTCCTCTTCCAATCCTATTGGAACCACCATTCCAATCCAACTCCCGCATGCCCCATGATTTGCTCTACTCCCATCTCTACATCTACCATTTTCCATCTCCTCATATATAAATTAGCCTTATAATCGTTTTTTCATTTTAATCACAAACCCCAAAGTCCTCTACCAAACCCACCATAGCTTAGCCACAACATGGAGGCCAATCCTTCTCACACTACAACCCCTCATCTTGATCATGCTCTACAAACTCCCTTGCTGAACCATCCATCAAGAGTGAACAATATTAGTCATAGACCATCAAGGGGTATCTTTGTGATACTTCTTTCCATTGTTTTTCTAGTGTCATTGGTTGCATTGATCATGATTCAGGGCCAAAACTACATGGAAAATTTGGAGAATAGCAACATAGAAATTACCCTTTTTTCTAACATCTCTAAGCAAGAATTGCCTAGAGGAGCGGCTCAAGGGGTTTCAGCCAAGTCCAACCCACCCCTTTTCCACAAAGTTTCATATAATTGGACCAACGCCATGTTTTCTTGGCAAAGAACAGCTTTTCATTTTCAACCACAAAATAATTGGATGAATGAGGCTAATCAACAATGTCTCGTTGACCCACTGGTGTTCCTGTTTCGTGCTGATGATGTCTGGTTGAATTGGCTTCAGATCCTGATGGTCCATTGTTTCACATGGGGTGGTACCATTTATTTTACCAATATAATCCTGATTCAGCTATATGGGGCAACATTTCATGGGGTCATGCTGTATCAAGGGACATGATTCACTGGTTCTACCTTCCCATTGCCATGGGACCTGACACGTGGTACGATATCAACGGTGTATGGACCGGGTCCGCCACGATTCTTCCAGGTGGCAAAATCATAATACTCTACACAGGTGACACCAATGAATATGTGCAAGTGCAAAACCTTGCATACCCTGCCAATCTATCTGATCCCCTTCTCCTTGATTGGGTCAAGTATGCGGGTAACCCGGTCCTAGTGCCCCCACCCGGTATCGGCCCGAAGGATTTTCGTGACCCAACCACGGGTTGGATCGGGCCGGATGGAAAGTGGAGGGTCGCAATTGGGTCAAAGAAAGGAAAAAAAGGCATTTCATTGGTTTACACAACCACAGATTTTGTCAATTTTGAGTCCAATGATCACTACTTACATGCGGTTCCGGGTACGGGTATGTGGGAGTGTGTGGACTTTTACCCAGTTTCAATAAGCGGGTCAAGGGGTTTGGATACATCAGAAAATGAGCCAAATGTTAAGCATGTGCTAAAGGCTAGCATGGATGAAACAAGGGTGGATCATTATGCACTTGGGACCTATTTTATTGAAAATGATACATGGGTGCCCGATAACCCACTTGAGGATGTGGGTATTGGGTTGGTTTTGGACTATGGGAGATACTATGCTTCAAAGACTTTCTATGATCCAGAGAAAGAGAGGAGGATCCTGTGGGGTTGGATTAATGAAACGGATACAGAAAGTGATGACTTGAGAAAGGGTTGGGCTTCTCTTCAGACAATTCCGAGAACAGTGCTGTTTGACAGCAAGACTGGGACTAATTTGCTTCTGTGGCCAGTAGAGGAAGTAGAAAGCTTAAGACTAAGCAGTGATGAATTTGAAGGAGTGGTGGTTAAGCCTGGATCTGTTGTGCCACTGAACATAAGCCTAGCAACACAGTTGGACATGTTTGCTGAATTTGAGATTGAAACATTGGAATCCAAAAGCATTGGCAAGAACAACATAGGTTGTGGAAGTGGTGGTGCCACAAACAGAAGTGCTTTTGGACCATTTGGTCTTTTAGCCATTGCAGATGACACACTTTCAGAACAAACCCCAATTTATTTTCGCCTTTCTAATACTACCCTTGGTAGTTCAACCACTTTTTTTTGTGTTGATGAAACAAGATCATCCAAGGCTGCTGATGTTGCAAAGCCAATTTATGGAAGCAAAGTTCCAGTCCTTAGTGATGAAAAATTATCAATGAGGGTGTTGGTTGACCATTCAATTATTGAGAGCTTTGCTCAAGGAGGGAGAACTGTGATCACAAGTAGAGTTTACCCAACGGAAGCAATATATGGAGCTGCAAGATTATTTCTATTCAACAATGCAACTGGCATAAACATTAAGGCCACCCTAAAGATTTGGCAATTGAGCTCTGCTTTTATACGCCCCTTTCCCTTTGATCAAAGTCAATAAGGAGTGTTTAAACTATACGATGTACTTTTTAATTTGCATCCTACTCAGCTATATTCCTCTTTTTTTTTGTTTGTTTATTATTATGAATAATTCATGTATTGCTATTGCCATATATATAGAGAGCAACAAGCATTCATGAAGTTGA

Coding sequences of Glyma06g47640

Limit To All Plant Sequences

>Glyma06g47640.2   sequence type=CDS   gene model=Glyma06g47640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCAATCCTTCTCACACTACAACCCCTCATCTTGATCATGCTCTACAAACTCCCTTGCTGAACCATCCATCAAGAGTGAACAATATTAGTCATAGACCATCAAGGGGTATCTTTGTGATACTTCTTTCCATTGTTTTTCTAGTGTCATTGGTTGCATTGATCATGATTCAGGGCCAAAACTACATGGAAAATTTGGAGAATAGCAACATAGAAATTACCCTTTTTTCTAACATCTCTAAGCAAGAATTGCCTAGAGGAGCGGCTCAAGGGGTTTCAGCCAAGTCCAACCCACCCCTTTTCCACAAAGTTTCATATAATTGGACCAACGCCATGTTTTCTTGGCAAAGAACAGCTTTTCATTTTCAACCACAAAATAATTGGATGAATGATCCTGATGGTCCATTGTTTCACATGGGGTGGTACCATTTATTTTACCAATATAATCCTGATTCAGCTATATGGGGCAACATTTCATGGGGTCATGCTGTATCAAGGGACATGATTCACTGGTTCTACCTTCCCATTGCCATGGGACCTGACACGTGGTACGATATCAACGGTGTATGGACCGGGTCCGCCACGATTCTTCCAGGTGGCAAAATCATAATACTCTACACAGGTGACACCAATGAATATGTGCAAGTGCAAAACCTTGCATACCCTGCCAATCTATCTGATCCCCTTCTCCTTGATTGGGTCAAGTATGCGGGTAACCCGGTCCTAGTGCCCCCACCCGGTATCGGCCCGAAGGATTTTCGTGACCCAACCACGGGTTGGATCGGGCCGGATGGAAAGTGGAGGGTCGCAATTGGGTCAAAGAAAGGAAAAAAAGGCATTTCATTGGTTTACACAACCACAGATTTTGTCAATTTTGAGTCCAATGATCACTACTTACATGCGGTTCCGGGTACGGGTATGTGGGAGTGTGTGGACTTTTACCCAGTTTCAATAAGCGGGTCAAGGGGTTTGGATACATCAGAAAATGAGCCAAATGTTAAGCATGTGCTAAAGGCTAGCATGGATGAAACAAGGGTGGATCATTATGCACTTGGGACCTATTTTATTGAAAATGATACATGGGTGCCCGATAACCCACTTGAGGATGTGGGTATTGGGTTGGTTTTGGACTATGGGAGATACTATGCTTCAAAGACTTTCTATGATCCAGAGAAAGAGAGGAGGATCCTGTGGGGTTGGATTAATGAAACGGATACAGAAAGTGATGACTTGAGAAAGGGTTGGGCTTCTCTTCAGACAATTCCGAGAACAGTGCTGTTTGACAGCAAGACTGGGACTAATTTGCTTCTGTGGCCAGTAGAGGAAGTAGAAAGCTTAAGACTAAGCAGTGATGAATTTGAAGGAGTGGTGGTTAAGCCTGGATCTGTTGTGCCACTGAACATAAGCCTAGCAACACAGTTGGACATGTTTGCTGAATTTGAGATTGAAACATTGGAATCCAAAAGCATTGGCAAGAACAACATAGGTTGTGGAAGTGGTGGTGCCACAAACAGAAGTGCTTTTGGACCATTTGGTCTTTTAGCCATTGCAGATGACACACTTTCAGAACAAACCCCAATTTATTTTCGCCTTTCTAATACTACCCTTGGTAGTTCAACCACTTTTTTTTGTGTTGATGAAACAAGATCATCCAAGGCTGCTGATGTTGCAAAGCCAATTTATGGAAGCAAAGTTCCAGTCCTTAGTGATGAAAAATTATCAATGAGGGTGTTGGTTGACCATTCAATTATTGAGAGCTTTGCTCAAGGAGGGAGAACTGTGATCACAAGTAGAGTTTACCCAACGGAAGCAATATATGGAGCTGCAAGATTATTTCTATTCAACAATGCAACTGGCATAAACATTAAGGCCACCCTAAAGATTTGGCAATTGAGCTCTGCTTTTATACGCCCCTTTCCCTTTGATCAAAGTCAATAA

>Glyma06g47640.3   sequence type=CDS   gene model=Glyma06g47640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGGTACCATTTATTTTACCAATATAATCCTGATTCAGCTATATGGGGCAACATTTCATGGGGTCATGCTGTATCAAGGGACATGATTCACTGGTTCTACCTTCCCATTGCCATGGGACCTGACACGTGGTACGATATCAACGGTGTATGGACCGGGTCCGCCACGATTCTTCCAGGTGGCAAAATCATAATACTCTACACAGGTGACACCAATGAATATGTGCAAGTGCAAAACCTTGCATACCCTGCCAATCTATCTGATCCCCTTCTCCTTGATTGGGTCAAGTATGCGGGTAACCCGGTCCTAGTGCCCCCACCCGGTATCGGCCCGAAGGATTTTCGTGACCCAACCACGGGTTGGATCGGGCCGGATGGAAAGTGGAGGGTCGCAATTGGGTCAAAGAAAGGAAAAAAAGGCATTTCATTGGTTTACACAACCACAGATTTTGTCAATTTTGAGTCCAATGATCACTACTTACATGCGGTTCCGGGTACGGGTATGTGGGAGTGTGTGGACTTTTACCCAGTTTCAATAAGCGGGTCAAGGGGTTTGGATACATCAGAAAATGAGCCAAATGTTAAGCATGTGCTAAAGGCTAGCATGGATGAAACAAGGGTGGATCATTATGCACTTGGGACCTATTTTATTGAAAATGATACATGGGTGCCCGATAACCCACTTGAGGATGTGGGTATTGGGTTGGTTTTGGACTATGGGAGATACTATGCTTCAAAGACTTTCTATGATCCAGAGAAAGAGAGGAGGATCCTGTGGGGTTGGATTAATGAAACGGATACAGAAAGTGATGACTTGAGAAAGGGTTGGGCTTCTCTTCAGACAATTCCGAGAACAGTGCTGTTTGACAGCAAGACTGGGACTAATTTGCTTCTGTGGCCAGTAGAGGAAGTAGAAAGCTTAAGACTAAGCAGTGATGAATTTGAAGGAGTGGTGGTTAAGCCTGGATCTGTTGTGCCACTGAACATAAGCCTAGCAACACAGTTGGACATGTTTGCTGAATTTGAGATTGAAACATTGGAATCCAAAAGCATTGGCAAGAACAACATAGGTTGTGGAAGTGGTGGTGCCACAAACAGAAGTGCTTTTGGACCATTTGGTCTTTTAGCCATTGCAGATGACACACTTTCAGAACAAACCCCAATTTATTTTCGCCTTTCTAATACTACCCTTGGTAGTTCAACCACTTTTTTTTGTGTTGATGAAACAAGATCATCCAAGGCTGCTGATGTTGCAAAGCCAATTTATGGAAGCAAAGTTCCAGTCCTTAGTGATGAAAAATTATCAATGAGGGTGTTGGTTGACCATTCAATTATTGAGAGCTTTGCTCAAGGAGGGAGAACTGTGATCACAAGTAGAGTTTACCCAACGGAAGCAATATATGGAGCTGCAAGATTATTTCTATTCAACAATGCAACTGGCATAAACATTAAGGCCACCCTAAAGATTTGGCAATTGAGCTCTGCTTTTATACGCCCCTTTCCCTTTGATCAAAGTCAATAA

Predicted protein sequences of Glyma06g47640

Limit To All Plant Sequences

>Glyma06g47640.2   sequence type=predicted peptide   gene model=Glyma06g47640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEANPSHTTTPHLDHALQTPLLNHPSRVNNISHRPSRGIFVILLSIVFLVSLVALIMIQGQNYMENLENSNIEITLFSNISKQELPRGAAQGVSAKSNPPLFHKVSYNWTNAMFSWQRTAFHFQPQNNWMNDPDGPLFHMGWYHLFYQYNPDSAIWGNISWGHAVSRDMIHWFYLPIAMGPDTWYDINGVWTGSATILPGGKIIILYTGDTNEYVQVQNLAYPANLSDPLLLDWVKYAGNPVLVPPPGIGPKDFRDPTTGWIGPDGKWRVAIGSKKGKKGISLVYTTTDFVNFESNDHYLHAVPGTGMWECVDFYPVSISGSRGLDTSENEPNVKHVLKASMDETRVDHYALGTYFIENDTWVPDNPLEDVGIGLVLDYGRYYASKTFYDPEKERRILWGWINETDTESDDLRKGWASLQTIPRTVLFDSKTGTNLLLWPVEEVESLRLSSDEFEGVVVKPGSVVPLNISLATQLDMFAEFEIETLESKSIGKNNIGCGSGGATNRSAFGPFGLLAIADDTLSEQTPIYFRLSNTTLGSSTTFFCVDETRSSKAADVAKPIYGSKVPVLSDEKLSMRVLVDHSIIESFAQGGRTVITSRVYPTEAIYGAARLFLFNNATGINIKATLKIWQLSSAFIRPFPFDQSQ*

>Glyma06g47640.3   sequence type=predicted peptide   gene model=Glyma06g47640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWYHLFYQYNPDSAIWGNISWGHAVSRDMIHWFYLPIAMGPDTWYDINGVWTGSATILPGGKIIILYTGDTNEYVQVQNLAYPANLSDPLLLDWVKYAGNPVLVPPPGIGPKDFRDPTTGWIGPDGKWRVAIGSKKGKKGISLVYTTTDFVNFESNDHYLHAVPGTGMWECVDFYPVSISGSRGLDTSENEPNVKHVLKASMDETRVDHYALGTYFIENDTWVPDNPLEDVGIGLVLDYGRYYASKTFYDPEKERRILWGWINETDTESDDLRKGWASLQTIPRTVLFDSKTGTNLLLWPVEEVESLRLSSDEFEGVVVKPGSVVPLNISLATQLDMFAEFEIETLESKSIGKNNIGCGSGGATNRSAFGPFGLLAIADDTLSEQTPIYFRLSNTTLGSSTTFFCVDETRSSKAADVAKPIYGSKVPVLSDEKLSMRVLVDHSIIESFAQGGRTVITSRVYPTEAIYGAARLFLFNNATGINIKATLKIWQLSSAFIRPFPFDQSQ*

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