Glyma06g47590 - SoyBase

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Report for Sequence Feature Glyma06g47590

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49984461
stop:	49991248
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25190	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF566) \| chr4:12914400-12916001 REVERSE LENGTH=395	SoyBase	E_val: 2.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04484	PFAM	Family of unknown function (DUF566)	JGI		ISS
UniRef100_I1KFR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KFR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g47590 not represented in the dataset	Glyma06g47590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47590

Paralog	Evidence	Comments
Glyma04g13990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g318000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g47590

Limit To All Plant Sequences

>Glyma06g47590.3   sequence type=transcript   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATATACATATATATTGAATAATCCCAACTTAAGAGCACCAAAACCATACACAAAACCATCAATGGACAAAACTGCCTCCACTCTATCCGGCCGCCACAACCTCACGGAGTTGCCGCCATCACCGCGACTTGTCCGTAGCCGAAGCGGTAGCAGCCCCGCCGCCGCTATAACCACCCCAGAGAGAAGTTCACATAGGTTAAGCTCTAGTCAAAGATTCACCATCACCAGTATCCAACGTTCAAAGTCAACATCAAGAACAAGAACAACCAACAATGAAAGAAACAATATTAACCTAAATCCCACTTTAACAACATCGGTTTCGAGTAAGCCAAAGAACAATAGGGTTCAAGAGAAGAAGAGTAGAGATGATGGCTTTGGCAAGTTCTTGCAACGTGGTGTTAGCCCTGATAATATTAATGTTGGAGCTTCAAAGAGGTCCACATCAAAGTCGCCTTCGGCGTGGGCGCTTTCGCCGGGAAGGTGGTCACTTGGCTCTCCAATATGGTCTCAACCCCCGGCGAAAACAAATGGTAGTGATAACGGTAATAATGATAGTAGTGTTGGTGGTGGTGTTACTAAAGTCTTGAAGTACTTCAAGCAAAGAAAAGTATCGTCAGTGCAAGAAGAAGAGTACCATCGGTTTAGGATTTTGCATAATACACTTTTGCAATGGAGATTTATCAATGCTAGAGCTGAGGTTGCCATGGCTAATGTCAAGAATATAGCCGAGATAAAATTGTTTTCTGTATGGCTTAGAGCCCTCATGTTGAGAAAGATAACAATACAGAAAAGAATCGAATTGCGAAAGGTCAAACAACTGGTCAAGCTTTATCAAATTTTGGATGGACAACTCTATCTTCTTACTGAATGGGCACAATTAGAGAGAAGAAATCAAGAATCCGTAGCCAGATTGACAAGGAAGTTGTCAGCATTATCCACCATACTGCCTTTAACTCACACTGTTAAGGTAGACACGGAATCCGTCTTTGAAGCCCTAAATACAGCCGCTAAAGTAATGGAGAGCATCGAACCATTAATGGCGAAATACCAAACAAAGAAGGTTGAAAGGATTCTTTATCAAATTACAGAACTAACCACCACATTAAAACAGGAAGAAGAGTACTTACAAAAACTTCTGGGGCTTGTTCCGGTTATTTCTACTTTATTGGGCCAAGCTCGGTTGACTCATTTGACAGCTCTAGTTGGAAGTATTCCTGGAGAATGAGAAAAGCATTCGAGTGCATCTTATCCAAACAAGATCCAATACCATCAACTATATCTGCATGTAGTGTTGCTCAATGATGTATTTGAAATGAGATGTCATTGCACGTATTCAAGGGTGGTCAATATTTTCTAACGATAACAGCTTGTTCGATAGTGCTACAATTTTGATTAAACGGGCATGCACATATAGAAATCTTGTTACATGAAGTTATGATGTTGACGTACAATATTACATTTGAAACGTTCCCTTCCGTTTTCAAAAGATGAAACTGATGGAAAAAGGCTAATGTTATATTCACAGGAAAATTCTGCCGAACCAAATTGTTATTCTTAGGGTTTTACTAAAACCAAATAGTTCAGATAGTGTCACTCAATTTTCTTTTTTCCAGTGCTTGATAATCTAATATTTGATGCTATATATAAACAGCTCTTTTAAGAAGAAGCCTCATGATGACCATTGTTTTCCTTTTCTTCGATGTGCCTTGTTCACATACTAGCTAGCTCTAGTTTTGTTCATGGCAACAAATGATCCTCATTCCTCACATCCTTAAGTGTATAATCATTATCGAAACTGAACTAAGGATAATGCTAATAAAGCTTAAATTTTAATTTATTAAAAAAATGTTTGTTATTATAAAAC

>Glyma06g47590.4   sequence type=transcript   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATATACATATATATTGAATAATCCCAACTTAAGAGCACCAAAACCATACACAAAACCATCAATGGACAAAACTGCCTCCACTCTATCCGGCCGCCACAACCTCACGGAGTTGCCGCCATCACCGCGACTTGTCCGTAGCCGAAGCGGTAGCAGCCCCGCCGCCGCTATAACCACCCCAGAGAGAAGTTCACATAGGTTAAGCTCTAGTCAAAGATTCACCATCACCAGTATCCAACGTTCAAAGTCAACATCAAGAACAAGAACAACCAACAATGAAAGAAACAATATTAACCTAAATCCCACTTTAACAACATCGGTTTCGAGTAAGCCAAAGAACAATAGGGTTCAAGAGAAGAAGAGTAGAGATGATGGCTTTGGCAAGTTCTTGCAACGTGGTGTTAGCCCTGATAATATTAATGTTGGAGCTTCAAAGAGGTCCACATCAAAGTCGCCTTCGGCGTGGGCGCTTTCGCCGGGAAGGTGGTCACTTGGCTCTCCAATATGGTCTCAACCCCCGGCGAAAACAAATGGTAGTGATAACGGTAATAATGATAGTAGTGTTGGTGGTGGTGTTACTAAAGTCTTGAAGTACTTCAAGCAAAGAAAAGTATCGTCAGTGCAAGAAGAAGAGTACCATCGGTTTAGGATTTTGCATAATACACTTTTGCAATGGAGATTTATCAATGCTAGAGCTGAGGTTGCCATGGCTAATGTCAAGAATATAGCCGAGATAAAATTGTTTTCTGTATGGCTTAGAGCCCTCATGTTGAGAAAGATAACAATACAGAAAAGAATCGAATTGCGAAAGGTCAAACAACTGGTCAAGCTTTATCAAATTTTGGATGGACAACTCTATCTTCTTACTGAATGGGCACAATTAGAGAGAAGAAATCAAGAATCCGTAGCCAGATTGACAAGGAAGTTGTCAGCATTATCCACCATACTGCCTTTAACTCACACTGTTAAGGTAGACACGGAATCCGTCTTTGAAGCCCTAAATACAGCCGCTAAAGTAATGGAGAGCATCGAACCATTAATGGCGAAATACCAAACAAAGGAGAATGAGAAAAGCATTCGAGTGCATCTTATCCAAACAAGATCCAATACCATCAACTATATCTGCATGTAGTGTTGCTCAATGATGTATTTGAAATGAGATGTCATTGCACGTATTCAAGGGTGGTCAATATTTTCTAACGATAACAGCTTGTTCGATAGTGCTACAATTTTGATTAAACGGGCATGCACATATAGAAATCTTGTTACATGAAGTTATGATGTTGACGTACAATATTACATTTGAAACGTTCCCTTCCGTTTTCAAAAGATGAAACTGATGGAAAAAGGCTAATGTTATATTCACAGGAAAATTCTGCCGAACCAAATTGTTATTCTTAGGGTTTTACTAAAACCAAATAGTTCAGATAGTGTCACTCAATTTTCTTTTTTCCAGTGCTTGATAATCTAATATTTGATGCTATATATAAACAGCTCTTTTAAGAAGAAGCCTCATGATGACCATTGTTTTCCTTTTCTTCGATGTGCCTTGTTCACATACTAGCTAGCTCTAGTTTTGTTCATGGCAACAAATGATCCTCATTCCTCACATCCTTAAGTGTATAATCATTATCGAAACTGAACTAAGGATAATGCTAATAAAGCTTAAATTTTAATTTATTAAAAAAATGTTTGTTATTATAAAAC

Coding sequences of Glyma06g47590

Limit To All Plant Sequences

>Glyma06g47590.2   sequence type=CDS   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAAACTGCCTCCACTCTATCCGGCCGCCACAACCTCACGGAGTTGCCGCCATCACCGCGACTTGTCCGTAGCCGAAGCGGTAGCAGCCCCGCCGCCGCTATAACCACCCCAGAGAGAAGTTCACATAGGTTAAGCTCTAGTCAAAGATTCACCATCACCAGTATCCAACGTTCAAAGTCAACATCAAGAACAAGAACAACCAACAATGAAAGAAACAATATTAACCTAAATCCCACTTTAACAACATCGGTTTCGAGTAAGCCAAAGAACAATAGGGTTCAAGAGAAGAAGAGTAGAGATGATGGCTTTGGCAAGTTCTTGCAACGTGGTGTTAGCCCTGATAATATTAATGTTGGAGCTTCAAAGAGGTCCACATCAAAGTCGCCTTCGGCGTGGGCGCTTTCGCCGGGAAGGTGGTCACTTGGCTCTCCAATATGGTCTCAACCCCCGGCGAAAACAAATGGTAGTGATAACGGTAATAATGATAGTAGTGTTGGTGGTGGTGTTACTAAAGTCTTGAAGTACTTCAAGCAAAGAAAAGTATCGTCAGTGCAAGAAGAAGAGTACCATCGGTTTAGGATTTTGCATAATACACTTTTGCAATGGAGATTTATCAATGCTAGAGCTGAGGTTGCCATGGCTAATGTCAAGAATATAGCCGAGATAAAATTGTTTTCTGTATGGCTTAGAGCCCTCATGTTGAGAAAGATAACAATACAGAAAAGAATCGAATTGCGAAAGGTCAAACAACTGGTCAAGCTTTATCAAATTTTGGATGGACAACTCTATCTTCTTACTGAATGGGCACAATTAGAGAGAAGAAATCAAGAATCCGTAGCCAGATTGACAAGGAAGTTGTCAGCATTATCCACCATACTGCCTTTAACTCACACTGTTAAGGTAGACACGGAATCCGTCTTTGAAGCCCTAAATACAGCCGCTAAAGTAATGGAGAGCATCGAACCATTAATGGCGAAATACCAAACAAAGAAGGTTGAAAGGATTCTTTATCAAATTACAGAACTAACCACCACATTAAAACAGGAAGAAGAGTACTTACAAAAACTTCTGGGGCTTGTTCCGGTTATTTCTACTTTATTGGAGAATGAGAAAAGCATTCGAGTGCATCTTATCCAAACAAGATCCAATACCATCAACTATATCTGCATGTAG

>Glyma06g47590.3   sequence type=CDS   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAAACTGCCTCCACTCTATCCGGCCGCCACAACCTCACGGAGTTGCCGCCATCACCGCGACTTGTCCGTAGCCGAAGCGGTAGCAGCCCCGCCGCCGCTATAACCACCCCAGAGAGAAGTTCACATAGGTTAAGCTCTAGTCAAAGATTCACCATCACCAGTATCCAACGTTCAAAGTCAACATCAAGAACAAGAACAACCAACAATGAAAGAAACAATATTAACCTAAATCCCACTTTAACAACATCGGTTTCGAGTAAGCCAAAGAACAATAGGGTTCAAGAGAAGAAGAGTAGAGATGATGGCTTTGGCAAGTTCTTGCAACGTGGTGTTAGCCCTGATAATATTAATGTTGGAGCTTCAAAGAGGTCCACATCAAAGTCGCCTTCGGCGTGGGCGCTTTCGCCGGGAAGGTGGTCACTTGGCTCTCCAATATGGTCTCAACCCCCGGCGAAAACAAATGGTAGTGATAACGGTAATAATGATAGTAGTGTTGGTGGTGGTGTTACTAAAGTCTTGAAGTACTTCAAGCAAAGAAAAGTATCGTCAGTGCAAGAAGAAGAGTACCATCGGTTTAGGATTTTGCATAATACACTTTTGCAATGGAGATTTATCAATGCTAGAGCTGAGGTTGCCATGGCTAATGTCAAGAATATAGCCGAGATAAAATTGTTTTCTGTATGGCTTAGAGCCCTCATGTTGAGAAAGATAACAATACAGAAAAGAATCGAATTGCGAAAGGTCAAACAACTGGTCAAGCTTTATCAAATTTTGGATGGACAACTCTATCTTCTTACTGAATGGGCACAATTAGAGAGAAGAAATCAAGAATCCGTAGCCAGATTGACAAGGAAGTTGTCAGCATTATCCACCATACTGCCTTTAACTCACACTGTTAAGGTAGACACGGAATCCGTCTTTGAAGCCCTAAATACAGCCGCTAAAGTAATGGAGAGCATCGAACCATTAATGGCGAAATACCAAACAAAGAAGGTTGAAAGGATTCTTTATCAAATTACAGAACTAACCACCACATTAAAACAGGAAGAAGAGTACTTACAAAAACTTCTGGGGCTTGTTCCGGTTATTTCTACTTTATTGGGCCAAGCTCGGTTGACTCATTTGACAGCTCTAGTTGGAAGTATTCCTGGAGAATGA

>Glyma06g47590.4   sequence type=CDS   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAAACTGCCTCCACTCTATCCGGCCGCCACAACCTCACGGAGTTGCCGCCATCACCGCGACTTGTCCGTAGCCGAAGCGGTAGCAGCCCCGCCGCCGCTATAACCACCCCAGAGAGAAGTTCACATAGGTTAAGCTCTAGTCAAAGATTCACCATCACCAGTATCCAACGTTCAAAGTCAACATCAAGAACAAGAACAACCAACAATGAAAGAAACAATATTAACCTAAATCCCACTTTAACAACATCGGTTTCGAGTAAGCCAAAGAACAATAGGGTTCAAGAGAAGAAGAGTAGAGATGATGGCTTTGGCAAGTTCTTGCAACGTGGTGTTAGCCCTGATAATATTAATGTTGGAGCTTCAAAGAGGTCCACATCAAAGTCGCCTTCGGCGTGGGCGCTTTCGCCGGGAAGGTGGTCACTTGGCTCTCCAATATGGTCTCAACCCCCGGCGAAAACAAATGGTAGTGATAACGGTAATAATGATAGTAGTGTTGGTGGTGGTGTTACTAAAGTCTTGAAGTACTTCAAGCAAAGAAAAGTATCGTCAGTGCAAGAAGAAGAGTACCATCGGTTTAGGATTTTGCATAATACACTTTTGCAATGGAGATTTATCAATGCTAGAGCTGAGGTTGCCATGGCTAATGTCAAGAATATAGCCGAGATAAAATTGTTTTCTGTATGGCTTAGAGCCCTCATGTTGAGAAAGATAACAATACAGAAAAGAATCGAATTGCGAAAGGTCAAACAACTGGTCAAGCTTTATCAAATTTTGGATGGACAACTCTATCTTCTTACTGAATGGGCACAATTAGAGAGAAGAAATCAAGAATCCGTAGCCAGATTGACAAGGAAGTTGTCAGCATTATCCACCATACTGCCTTTAACTCACACTGTTAAGGTAGACACGGAATCCGTCTTTGAAGCCCTAAATACAGCCGCTAAAGTAATGGAGAGCATCGAACCATTAATGGCGAAATACCAAACAAAGGAGAATGAGAAAAGCATTCGAGTGCATCTTATCCAAACAAGATCCAATACCATCAACTATATCTGCATGTAG

Predicted protein sequences of Glyma06g47590

Limit To All Plant Sequences

>Glyma06g47590.2   sequence type=predicted peptide   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKTASTLSGRHNLTELPPSPRLVRSRSGSSPAAAITTPERSSHRLSSSQRFTITSIQRSKSTSRTRTTNNERNNINLNPTLTTSVSSKPKNNRVQEKKSRDDGFGKFLQRGVSPDNINVGASKRSTSKSPSAWALSPGRWSLGSPIWSQPPAKTNGSDNGNNDSSVGGGVTKVLKYFKQRKVSSVQEEEYHRFRILHNTLLQWRFINARAEVAMANVKNIAEIKLFSVWLRALMLRKITIQKRIELRKVKQLVKLYQILDGQLYLLTEWAQLERRNQESVARLTRKLSALSTILPLTHTVKVDTESVFEALNTAAKVMESIEPLMAKYQTKKVERILYQITELTTTLKQEEEYLQKLLGLVPVISTLLENEKSIRVHLIQTRSNTINYICM*

>Glyma06g47590.3   sequence type=predicted peptide   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKTASTLSGRHNLTELPPSPRLVRSRSGSSPAAAITTPERSSHRLSSSQRFTITSIQRSKSTSRTRTTNNERNNINLNPTLTTSVSSKPKNNRVQEKKSRDDGFGKFLQRGVSPDNINVGASKRSTSKSPSAWALSPGRWSLGSPIWSQPPAKTNGSDNGNNDSSVGGGVTKVLKYFKQRKVSSVQEEEYHRFRILHNTLLQWRFINARAEVAMANVKNIAEIKLFSVWLRALMLRKITIQKRIELRKVKQLVKLYQILDGQLYLLTEWAQLERRNQESVARLTRKLSALSTILPLTHTVKVDTESVFEALNTAAKVMESIEPLMAKYQTKKVERILYQITELTTTLKQEEEYLQKLLGLVPVISTLLGQARLTHLTALVGSIPGE*

>Glyma06g47590.4   sequence type=predicted peptide   gene model=Glyma06g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKTASTLSGRHNLTELPPSPRLVRSRSGSSPAAAITTPERSSHRLSSSQRFTITSIQRSKSTSRTRTTNNERNNINLNPTLTTSVSSKPKNNRVQEKKSRDDGFGKFLQRGVSPDNINVGASKRSTSKSPSAWALSPGRWSLGSPIWSQPPAKTNGSDNGNNDSSVGGGVTKVLKYFKQRKVSSVQEEEYHRFRILHNTLLQWRFINARAEVAMANVKNIAEIKLFSVWLRALMLRKITIQKRIELRKVKQLVKLYQILDGQLYLLTEWAQLERRNQESVARLTRKLSALSTILPLTHTVKVDTESVFEALNTAAKVMESIEPLMAKYQTKENEKSIRVHLIQTRSNTINYICM*

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