Glyma06g47460 - SoyBase

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Report for Sequence Feature Glyma06g47460

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49913383
stop:	49916520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61520	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr5:24739358-24741175 REVERSE LENGTH=514	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0254	KOG	Predicted transporter (major facilitator superfamily)	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF210	Panther		JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_G7IVL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hexose carrier n=1 Tax=Medicago truncatula RepID=G7IVL0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023392F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023392F6 related cluster n=1 Tax=unknown RepID=UPI00023392F6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g47460 not represented in the dataset	Glyma06g47460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g47460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g317100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g47460

Limit To All Plant Sequences

>Glyma06g47460.3   sequence type=transcript   gene model=Glyma06g47460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTATTGATGTATACACAATTAGACAATTAGTCAAGAAAGGCTGCACTGTGTTTTAGGTACTCGAGTAAGCAGCTATGGCAGTGGGATTGGCAATTGCAAACGAGGGAAGAGGTTACAGTGGGAAGATAACTTCTATTGTGATTCTATCTTGCATGGTGGCTGCCACTGGAGGCATTATCTTCGGTTATGATATAGGAATTTCAGAAGGTTTTTCATTTTTGGTTGGTTGGGGTCAAAAGACGAGTTTGAAGACAGTGAACCTTTATTGCCTGCAAGACCAAGTATTGGCAAATTGAACCAAAGAGGGGGAATGTTAGCATGATTGAAACAAAGGTGGAGTAACATCTATGGTGCCATTTTTGGAGAAATTTTTCCCAGATGTGTACACCAAGATGAAGCAAGACACCAAGGTTAGCAACTACTGCAAATTTGATAGCCAGCTCCTAACAGCATTCACTTCATCACTGTACATAGCAGGCCTTATAGCATCCTTCTTTGCCTCATCAGTCACAAGAGCCTTTGGCCGAAAACCATCAATCCTCATAGGTGGTGCTGCATTCCTCATTGGAGCAGCTCTTGGTGGTGCAGCTCTCAACATATACATGCTTATACTTGGTCGAGTTATGCTTGGAGTTGGGATTGGATTTGCCAATCAGTCAGCTCCATTATATCTCTCTGAAATGGCACCTCCAAGATACAGAGGTGCCATAAACACTGGTTTCCAGCTTTGTGTTGGCATTGGTGTTCTATCAGCTAATCTGGTCAACTTTGGCACAGAAAAAATCAAAGCTGGTTGGGGTTGGCGCATTTCTCTAGTTATGGCAGCAGTTCCAGCCTCAATGCTCACTTTTGGGTCACTTTTCCTCCCAGAAACACCAAACAGCATAATCCAACACGACAAGAACCATCAGAAGGCTAAGTTAATGCTGCAAAGAATCCGCGGCACCGATGATGTCCAACAAGAACTTGAAGACCTAATTGAAGCAAGTGAGATGTCAAATTCCATCAAACACCCATTTAAGAACATCTTGCATAGAAAATATAGGCCTCAACTTGTCATGGCAATAGCCATACCCTTCTTCCAACAATTCACAGGAATCAATGTCATATCCTTCTATGCTCCAATCCTCTTCCTAACAATCGGATTAGGAGAAAGCGCTTCGCTTCTTCTTTCAGCAGTTGTGACTGGATTTGTAGGCACTGCTTCAACATTCATATCAATGCTCATGGTTGATAGACTAGGCAGAAGAGTCTTGTTCATATCTGGGGGAATTCAGATGTTCTTCTCACAAGTTTTAATAGGGAGCATCATGGCAACTCAACTTGGTGACCATGGTGAAATAGACAAGAAATATGCATATTTGATTCTAGTTTTGATATGCATATATGTTGCTGGATTTGCATGGTCTTGGGGGCCACTAGGATGGTTGGTTCCTAGTGAGATTTTCCAACTGGAGATTAGATCAGCAGCACAAAGTATTACAGTTGCTGTGAACTTTTTCTTCACCTTCATAGTTGCTCAAACTTTTCTCATCATGCTATGCCATTTCAAGTTTGGCACTTTTTTCTTTTTTGGGGGATGGGTGGTGGTGATGACAGCATTTGTGTACTTGCTGTTACCAGAGACCAGGAATGTGCCAATTGAGCAAATGGATAGGGTATGGAGAGAACATTTTTTTTGGAAAAGAATTGTGGGACAAAGGAGTTAAGGCACCAAGATAGTGGTGCCTTGATATATATCACTCCACAATTAAGCAAGTTACAAGTAGTCAAATGCTTCTCATGTTAGTATGACTAATTTCTATAATTTGATTGCCAAGTTGCCTCGATCAAATTTGGAATGATGGGAGTAGAACAAAGA

Coding sequences of Glyma06g47460

Limit To All Plant Sequences

>Glyma06g47460.2   sequence type=CDS   gene model=Glyma06g47460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGGGATTGGCAATTGCAAACGAGGGAAGAGGTTACAGTGGGAAGATAACTTCTATTGTGATTCTATCTTGCATGGTGGCTGCCACTGGAGGCATTATCTTCGGTTATGATATAGGAATTTCAGGTGGAGTAACATCTATGGTGCCATTTTTGGAGAAATTTTTCCCAGATGTGTACACCAAGATGAAGCAAGACACCAAGGTTAGCAACTACTGCAAATTTGATAGCCAGCTCCTAACAGCATTCACTTCATCACTGTACATAGCAGGCCTTATAGCATCCTTCTTTGCCTCATCAGTCACAAGAGCCTTTGGCCGAAAACCATCAATCCTCATAGGTGGTGCTGCATTCCTCATTGGAGCAGCTCTTGGTGGTGCAGCTCTCAACATATACATGCTTATACTTGGTCGAGTTATGCTTGGAGTTGGGATTGGATTTGCCAATCAGTCAGCTCCATTATATCTCTCTGAAATGGCACCTCCAAGATACAGAGGTGCCATAAACACTGGTTTCCAGCTTTGTGTTGGCATTGGTGTTCTATCAGCTAATCTGGTCAACTTTGGCACAGAAAAAATCAAAGCTGGTTGGGGTTGGCGCATTTCTCTAGTTATGGCAGCAGTTCCAGCCTCAATGCTCACTTTTGGGTCACTTTTCCTCCCAGAAACACCAAACAGCATAATCCAACACGACAAGAACCATCAGAAGGCTAAGTTAATGCTGCAAAGAATCCGCGGCACCGATGATGTCCAACAAGAACTTGAAGACCTAATTGAAGCAAGTGAGATGTCAAATTCCATCAAACACCCATTTAAGAACATCTTGCATAGAAAATATAGGCCTCAACTTGTCATGGCAATAGCCATACCCTTCTTCCAACAATTCACAGGAATCAATGTCATATCCTTCTATGCTCCAATCCTCTTCCTAACAATCGGATTAGGAGAAAGCGCTTCGCTTCTTCTTTCAGCAGTTGTGACTGGATTTGTAGGCACTGCTTCAACATTCATATCAATGCTCATGGTTGATAGACTAGGCAGAAGAGTCTTGTTCATATCTGGGGGAATTCAGATGTTCTTCTCACAAGTTTTAATAGGGAGCATCATGGCAACTCAACTTGGTGACCATGGTGAAATAGACAAGAAATATGCATATTTGATTCTAGTTTTGATATGCATATATGTTGCTGGATTTGCATGGTCTTGGGGGCCACTAGGATGGTTGGTTCCTAGTGAGATTTTCCAACTGGAGATTAGATCAGCAGCACAAAGTATTACAGTTGCTGTGAACTTTTTCTTCACCTTCATAGTTGCTCAAACTTTTCTCATCATGCTATGCCATTTCAAGTTTGGCACTTTTTTCTTTTTTGGGGGATGGGTGGTGGTGATGACAGCATTTGTGTACTTGCTGTTACCAGAGACCAGGAATGTGCCAATTGAGCAAATGGATAGGGTATGGAGAGAACATTTTTTTTGGAAAAGAATTGTGGGACAAAGGAGTTAA

>Glyma06g47460.3   sequence type=CDS   gene model=Glyma06g47460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCCATTTTTGGAGAAATTTTTCCCAGATGTGTACACCAAGATGAAGCAAGACACCAAGGTTAGCAACTACTGCAAATTTGATAGCCAGCTCCTAACAGCATTCACTTCATCACTGTACATAGCAGGCCTTATAGCATCCTTCTTTGCCTCATCAGTCACAAGAGCCTTTGGCCGAAAACCATCAATCCTCATAGGTGGTGCTGCATTCCTCATTGGAGCAGCTCTTGGTGGTGCAGCTCTCAACATATACATGCTTATACTTGGTCGAGTTATGCTTGGAGTTGGGATTGGATTTGCCAATCAGTCAGCTCCATTATATCTCTCTGAAATGGCACCTCCAAGATACAGAGGTGCCATAAACACTGGTTTCCAGCTTTGTGTTGGCATTGGTGTTCTATCAGCTAATCTGGTCAACTTTGGCACAGAAAAAATCAAAGCTGGTTGGGGTTGGCGCATTTCTCTAGTTATGGCAGCAGTTCCAGCCTCAATGCTCACTTTTGGGTCACTTTTCCTCCCAGAAACACCAAACAGCATAATCCAACACGACAAGAACCATCAGAAGGCTAAGTTAATGCTGCAAAGAATCCGCGGCACCGATGATGTCCAACAAGAACTTGAAGACCTAATTGAAGCAAGTGAGATGTCAAATTCCATCAAACACCCATTTAAGAACATCTTGCATAGAAAATATAGGCCTCAACTTGTCATGGCAATAGCCATACCCTTCTTCCAACAATTCACAGGAATCAATGTCATATCCTTCTATGCTCCAATCCTCTTCCTAACAATCGGATTAGGAGAAAGCGCTTCGCTTCTTCTTTCAGCAGTTGTGACTGGATTTGTAGGCACTGCTTCAACATTCATATCAATGCTCATGGTTGATAGACTAGGCAGAAGAGTCTTGTTCATATCTGGGGGAATTCAGATGTTCTTCTCACAAGTTTTAATAGGGAGCATCATGGCAACTCAACTTGGTGACCATGGTGAAATAGACAAGAAATATGCATATTTGATTCTAGTTTTGATATGCATATATGTTGCTGGATTTGCATGGTCTTGGGGGCCACTAGGATGGTTGGTTCCTAGTGAGATTTTCCAACTGGAGATTAGATCAGCAGCACAAAGTATTACAGTTGCTGTGAACTTTTTCTTCACCTTCATAGTTGCTCAAACTTTTCTCATCATGCTATGCCATTTCAAGTTTGGCACTTTTTTCTTTTTTGGGGGATGGGTGGTGGTGATGACAGCATTTGTGTACTTGCTGTTACCAGAGACCAGGAATGTGCCAATTGAGCAAATGGATAGGGTATGGAGAGAACATTTTTTTTGGAAAAGAATTGTGGGACAAAGGAGTTAA

Predicted protein sequences of Glyma06g47460

Limit To All Plant Sequences

>Glyma06g47460.2   sequence type=predicted peptide   gene model=Glyma06g47460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGLAIANEGRGYSGKITSIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVDRLGRRVLFISGGIQMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFQLEIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFFFFGGWVVVMTAFVYLLLPETRNVPIEQMDRVWREHFFWKRIVGQRS*

>Glyma06g47460.3   sequence type=predicted peptide   gene model=Glyma06g47460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPFLEKFFPDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVDRLGRRVLFISGGIQMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFQLEIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFFFFGGWVVVMTAFVYLLLPETRNVPIEQMDRVWREHFFWKRIVGQRS*

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