Glyma06g47350 - SoyBase

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Report for Sequence Feature Glyma06g47350

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49825818
stop:	49831648
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38660	AT	Annotation by Michelle Graham. TAIR10: Amino acid dehydrogenase family protein \| chr2:16166392-16168194 FORWARD LENGTH=352	SoyBase	E_val: 7.00E-133	ISS
GO:0009396	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004488	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
KOG0089	KOG	Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase	JGI		ISS
PTHR10025	Panther	METHYLENETETRAHYDROFOLATE DEHYDROGENASE	JGI		ISS
PTHR10025:SF5	Panther	METHYLENETETRAHYDROFOLATE DEHYDROGENASE	JGI		ISS
PF00763	PFAM	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	JGI		ISS
PF02882	PFAM	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	JGI		ISS
UniRef100_G7IV98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FolD bifunctional protein n=1 Tax=Medicago truncatula RepID=G7IV98_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339FC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339FC5 related cluster n=1 Tax=unknown RepID=UPI0002339FC5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g47350 not represented in the dataset	Glyma06g47350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g47350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g316100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g47350

Limit To All Plant Sequences

>Glyma06g47350.2   sequence type=transcript   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAAAATAAAACAAAAATCTCACCACACAAGGTTGTATACTTGTACCACCAAAAGCCACAGTCGTAGTGTTAATTAGTACTTAGTGGATTCAATCTTCACTTTCATATTAACAAATCAACACAAATATTAGAGGTTGTGCCACTGATGGGGTGGTGGCATGGCACAGAACACTGAGAAAAGCATTGCATTCCTTTTCTGCTCCAACTTCTTGTATTTTGGCCCCAACCTCCCTGATGTTTGGGTTCCCAGAGAGCACACACCCCCTCACACCCTTTTTCCAGAAAGTCTCCAATGGGCTAATAATGGTCATAATGCTTTGATTCTTGAGGGAAAACCCAATTGCTAAACAGATAAAGCTTGAAGTGGCTGATGAGATAAGAAGGATGAAGAGTGGCATTGGGAAGTTTCCTAGACTGGCTGTGGTTTTGGTGGGTGATAGGAGGGACTCTCACACTTTCATTCACATTAAGTTGAAGGCCTGTGATCAAGTTGGCATTGAAACAGTGGCTTCCCAGTTGCCTGAAAACTGTGATGAAAGTGAACTGCTTGATGTTGTTTCCGGTTTCAATGAGGACCCGGATGTGCATGGCATTCTTGTGCAACTTCCTCTGCCTCAACATTTGGACGAGGAAAAAATTATCAATGTAGTGAGTCTTGAAAAGGATGTGGATGGCTTTCATCCCTTAAATATTGGAAATCTTGCAATAAGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACCTAGGCACGGTGTGGAAATCAAGGGGAAAAGAGCAGTGATAATTGGAAGAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGAGGCACCATGCAACAGTCAGCGTGTTACACGCGTATATGAAGAACCCAGAACATATAACTTCTGAAGCAGATATTGTGGTAGTAGATGTTGGAGTCCCCAACATAGTTTGTGGCAATTGGATAAAGAAAGGAGCTGTGGTGATTGACATGGGAACAAATCAAGTTAAGGATCCCAGCGGCCACGGCTTTTGTGTCTCGGGAGATGTTTGCTTTGAAGAGGCGGTTAAGGTGGCATCAGCCATTACCCCTGTTCCTGGAGGCGTGGGACCGGTTACAATATCAATGCTCCTCTCCAACACCCTTGATTCTGTGAAACGTGCTTTTGGAATGGTTTGATTAGATGATGTCTTTTCTCCAAAGTTCTATAGTGGATCTTCCATCTATATATGCTCATGAAACAGGTTTGCCATTTGTCATGCTATTTAAGAGAAAGTGACTCAATATTTTTTTTTTTTTATCGGCAAATGTTAATTGCTAGTTTGTTAGTTTTTGTAAGCAAGAGGGATCGAATCCACGTCCTTTCTCTCCTACCCTTATTTCTTAACCATCCAACCAACCTTATATCTCTGAAAGTGACTCAATATTATTATCCCAATGCTTCATGAACATACACATTTTCTCTGCTGGGGCGACTAACTAGAGCATCTGCATGTTACTTTCTATATAAAATGTATTTGTTGAGGCGAGCTTGCTATATGATTGATTTATTGCATTGCGAGGATCTAAATACACCACATAGGATCTGCAAATTAGTCTTTTTCGCTTCATTGCTTTGCAGTGCAAACACCCCTCTTGCAACCAAGAAAGAAAAAGGAAGATGCATTTTCTACTGTTTTGCTCATTAAGTAGAAACTGATGTAGAATTTTGTGTACATGGTTTGTACAGCTATTTGAAATGCACTCTTTGCGGCATCTCTTTTATGGATAGTTAATTAGCTTTTATTAAGATTGAGTGAGGAGGAATCAATGGTGTGCATATGCACACTCGTACACACACTGATATTACTTCATTTATTTAATTGATGCAATTAGATGCTTCAGAAAATGAACATATAAAGAATTTCATTTGGTCCTTTGTCTGGCTTTCAGCATTATTCCTTGGCAGTGGTTGCTACAAGTATTTCTATTATAATACTTTAATGAAATGTATATAACAATACTTTTTAAGTTGTCATAGGCATGGAGATTGTGGAAAGAAGGTGATCCAACAGAATTGATTGATGATTGTTTCGGGGAATCGTACGTTATATCAGAAGCCTTACATTGCATACAAGTTGGTCTTTTATGTCTACATCATCCAAATGATAGACCTAACATAAAAATGTACCTATTGTTATACATAAAAATGAATTTATGA

>Glyma06g47350.3   sequence type=transcript   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCACTTTCATATTAACAAATCAACACAAATATTAGAGGTTGTGCCACTGATGGGGTGGTGGCATGGCACAGAACACTGAGAAAAGCATTGCATTCCTTTTCTGCTCCAACTTCTTGTATTTTGGCCCCAACCTCCCTGATGTTTGGGTTCCCAGAGAGCACACACCCCCTCACACCCTTTTTCCAGAAAGTCTCCAATGGGCTAATAATGGTCATAATGCTTTGATTCTTGAGGGAAAACCCAATTGCTAAACAGATAAAGCTTGAAGTGGCTGATGAGATAAGAAGGATGAAGAGTGGCATTGGGAAGTTTCCTAGACTGGCTGTGGTTTTGGTGGGTGATAGGAGGGACTCTCACACTTTCATTCACATTAAGTTGAAGGCCTGTGATCAAGTTGGCATTGAAACAGTGGCTTCCCAGTTGCCTGAAAACTGTGATGAAAGTGAACTGCTTGATGTTGTTTCCGGTTTCAATGAGGACCCGGATGTGCATGGCATTCTTGTGCAACTTCCTCTGCCTCAACATTTGGACGAGGAAAAAATTATCAATGTAGTGAGTCTTGAAAAGGATGTGGATGGCTTTCATCCCTTAAATATTGGAAATCTTGCAATAAGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACCTAGGCACGGTGTGGAAATCAAGGGGAAAAGAGCAGTGATAATTGGAAGAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGAGGCACCATGCAACAGTCAGCGTGTTACACGCGTATATGAAGAACCCAGAACATATAACTTCTGAAGCAGATATTGTGGTAGTAGATGTTGGAGTCCCCAACATAGTTTGTGGCAATTGGATAAAGAAAGGAGCTGTGGTGATTGACATGGGAACAAATCAAGTTAAGGATCCCAGCGGCCACGGCTTTTGTGTCTCGGGAGATGTTTGCTTTGAAGAGGCGGTTAAGGTGGCATCAGCCATTACCCCTGTTCCTGGAGGCGTGGGACCGGTTACAATATCAATGCTCCTCTCCAACACCCTTGATTCTGTGAAACGTGCTTTTGGAATGGTTTGATTAGATGATGTCTTTTCTCCAAAGTTCTATAGTGGATCTTCCATCTATATATGCTCATGAAACAGGCATGGAGATTGTGGAAAGAAGGTGATCCAACAGAATTGATTGATGATTGT

Coding sequences of Glyma06g47350

Limit To All Plant Sequences

>Glyma06g47350.1   sequence type=CDS   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAGAACACTGAGAAAAGCATTGCATTCCTTTTCTGCTCCAACTTCTTGTATTTTGGCCCCAACCTCCCTGATGTTTGGGTTCCCAGAGAGCACACACCCCCTCACACCCTTTTTCCAGAAAGTCTCCAATGTAAGGAAAACCCAATTGCTAAACAGATAAAGCTTGAAGTGGCTGATGAGATAAGAAGGATGAAGAGTGGCATTGGGAAGTTTCCTAGACTGGCTGTGGTTTTGGTGGGTGATAGGAGGGACTCTCACACTTTCATTCACATTAAGTTGAAGGCCTGTGATCAAGTTGGCATTGAAACAGTGGCTTCCCAGTTGCCTGAAAACTGTGATGAAAGTGAACTGCTTGATGTTGTTTCCGGTTTCAATGAGGACCCGGATGTGCATGGCATTCTTGTGCAACTTCCTCTGCCTCAACATTTGGACGAGGAAAAAATTATCAATGTAGTGAGTCTTGAAAAGGATGTGGATGGCTTTCATCCCTTAAATATTGGAAATCTTGCAATAAGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACCTAGGCACGGTGTGGAAATCAAGGGGAAAAGAGCAGTGATAATTGGAAGAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGAGGCACCATGCAACAGTCAGCGTGTTACACGCGTATATGAAGAACCCAGAACATATAACTTCTGAAGCAGATATTGTGGTAGTAGATGTTGGAGTCCCCAACATAGTTTGTGGCAATTGGATAAAGAAAGGAGCTGTGGTGATTGACATGGGAACAAATCAAGTTAAGGATCCCAGCGGCCACGGCTTTTGTGTCTCGGGAGATGTTTGCTTTGAAGAGGCGGTTAAGGTGGCATCAGCCATTACCCCTGTTCCTGGAGGCGTGGGACCGGTTACAATATCAATGCTCCTCTCCAACACCCTTGATTCTGTGAAACGTGCTTTTGGAATGGTTTGA

>Glyma06g47350.2   sequence type=CDS   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGTGGCATTGGGAAGTTTCCTAGACTGGCTGTGGTTTTGGTGGGTGATAGGAGGGACTCTCACACTTTCATTCACATTAAGTTGAAGGCCTGTGATCAAGTTGGCATTGAAACAGTGGCTTCCCAGTTGCCTGAAAACTGTGATGAAAGTGAACTGCTTGATGTTGTTTCCGGTTTCAATGAGGACCCGGATGTGCATGGCATTCTTGTGCAACTTCCTCTGCCTCAACATTTGGACGAGGAAAAAATTATCAATGTAGTGAGTCTTGAAAAGGATGTGGATGGCTTTCATCCCTTAAATATTGGAAATCTTGCAATAAGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACCTAGGCACGGTGTGGAAATCAAGGGGAAAAGAGCAGTGATAATTGGAAGAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGAGGCACCATGCAACAGTCAGCGTGTTACACGCGTATATGAAGAACCCAGAACATATAACTTCTGAAGCAGATATTGTGGTAGTAGATGTTGGAGTCCCCAACATAGTTTGTGGCAATTGGATAAAGAAAGGAGCTGTGGTGATTGACATGGGAACAAATCAAGTTAAGGATCCCAGCGGCCACGGCTTTTGTGTCTCGGGAGATGTTTGCTTTGAAGAGGCGGTTAAGGTGGCATCAGCCATTACCCCTGTTCCTGGAGGCGTGGGACCGGTTACAATATCAATGCTCCTCTCCAACACCCTTGATTCTGTGAAACGTGCTTTTGGAATGGTTTGA

>Glyma06g47350.3   sequence type=CDS   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGTGGCATTGGGAAGTTTCCTAGACTGGCTGTGGTTTTGGTGGGTGATAGGAGGGACTCTCACACTTTCATTCACATTAAGTTGAAGGCCTGTGATCAAGTTGGCATTGAAACAGTGGCTTCCCAGTTGCCTGAAAACTGTGATGAAAGTGAACTGCTTGATGTTGTTTCCGGTTTCAATGAGGACCCGGATGTGCATGGCATTCTTGTGCAACTTCCTCTGCCTCAACATTTGGACGAGGAAAAAATTATCAATGTAGTGAGTCTTGAAAAGGATGTGGATGGCTTTCATCCCTTAAATATTGGAAATCTTGCAATAAGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACCTAGGCACGGTGTGGAAATCAAGGGGAAAAGAGCAGTGATAATTGGAAGAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGAGGCACCATGCAACAGTCAGCGTGTTACACGCGTATATGAAGAACCCAGAACATATAACTTCTGAAGCAGATATTGTGGTAGTAGATGTTGGAGTCCCCAACATAGTTTGTGGCAATTGGATAAAGAAAGGAGCTGTGGTGATTGACATGGGAACAAATCAAGTTAAGGATCCCAGCGGCCACGGCTTTTGTGTCTCGGGAGATGTTTGCTTTGAAGAGGCGGTTAAGGTGGCATCAGCCATTACCCCTGTTCCTGGAGGCGTGGGACCGGTTACAATATCAATGCTCCTCTCCAACACCCTTGATTCTGTGAAACGTGCTTTTGGAATGGTTTGA

Predicted protein sequences of Glyma06g47350

Limit To All Plant Sequences

>Glyma06g47350.1   sequence type=predicted peptide   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQNTEKSIAFLFCSNFLYFGPNLPDVWVPREHTPPHTLFPESLQCKENPIAKQIKLEVADEIRRMKSGIGKFPRLAVVLVGDRRDSHTFIHIKLKACDQVGIETVASQLPENCDESELLDVVSGFNEDPDVHGILVQLPLPQHLDEEKIINVVSLEKDVDGFHPLNIGNLAIRGRKPFFVPCAPKGCIELLPRHGVEIKGKRAVIIGRSKIVGLPTSLLLQRHHATVSVLHAYMKNPEHITSEADIVVVDVGVPNIVCGNWIKKGAVVIDMGTNQVKDPSGHGFCVSGDVCFEEAVKVASAITPVPGGVGPVTISMLLSNTLDSVKRAFGMV*

>Glyma06g47350.2   sequence type=predicted peptide   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSGIGKFPRLAVVLVGDRRDSHTFIHIKLKACDQVGIETVASQLPENCDESELLDVVSGFNEDPDVHGILVQLPLPQHLDEEKIINVVSLEKDVDGFHPLNIGNLAIRGRKPFFVPCAPKGCIELLPRHGVEIKGKRAVIIGRSKIVGLPTSLLLQRHHATVSVLHAYMKNPEHITSEADIVVVDVGVPNIVCGNWIKKGAVVIDMGTNQVKDPSGHGFCVSGDVCFEEAVKVASAITPVPGGVGPVTISMLLSNTLDSVKRAFGMV*

>Glyma06g47350.3   sequence type=predicted peptide   gene model=Glyma06g47350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSGIGKFPRLAVVLVGDRRDSHTFIHIKLKACDQVGIETVASQLPENCDESELLDVVSGFNEDPDVHGILVQLPLPQHLDEEKIINVVSLEKDVDGFHPLNIGNLAIRGRKPFFVPCAPKGCIELLPRHGVEIKGKRAVIIGRSKIVGLPTSLLLQRHHATVSVLHAYMKNPEHITSEADIVVVDVGVPNIVCGNWIKKGAVVIDMGTNQVKDPSGHGFCVSGDVCFEEAVKVASAITPVPGGVGPVTISMLLSNTLDSVKRAFGMV*

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