Glyma06g47220 - SoyBase

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Report for Sequence Feature Glyma06g47220

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49729539
stop:	49735850
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56850	AT	Annotation by Michelle Graham. TAIR10: ABA-responsive element binding protein 3 \| chr3:21046554-21047894 REVERSE LENGTH=297	SoyBase	E_val: 1.00E-91	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF45	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_D9ZIQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIQ3_MALDO	SoyBase	E_val: 4.00E-166	ISS
UniRef100_I1KFN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFN0_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma06g47220

Locus	Gene Symbol	Protein Name
	FDL0647	Flowering Locus D-like gene 647

Expression Patterns of Glyma06g47220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47220

Paralog	Evidence	Comments
Glyma04g14840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g314400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g47220

Limit To All Plant Sequences

>Glyma06g47220.2   sequence type=transcript   gene model=Glyma06g47220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAACCTTGGTCTGACATGTTTGTTGGGATTCATTTTTCTTTTTAGTTTGCCTGTCCTCTTTTTTGCCCTTGAAGATTCAATTTTTGAAGTTGATTCTTACTGTCTATGGTTGTCATTTTATAATTCATTTTATAAAAGGGACACAATTTAATTCATAATGTGTTTGGAACTATGTCCATGGCCTACATTGAAGAAGCATGACGTGGAAGCAACAAGTGCTGGCATTGCGATTTATGGGTTTTTCATGTTGATGTGACACGTTTCATGTTGATGGTCTCATTATACAGGGGGATATGATTGAAGATTTTGATCTGTTTCTTTTACCCTTTCAGTGGTAAAACTTATGAAATACGGATTGAATTCTTAACTCTGGTAATTGGTTACTGGGGATCCGAACTATGGGGTCTCAATGTGGTGGTGATAATAGTGGAAAACATTCACAACTCCAGCCTCTGGTGCCGCAAAATTCAATGTACAGCCTCACACTTGATGAAGTTCAGAATCATTTAGGTGACTTAGGGAAACCTCTAAGTAGCATGAACCTTGACGAGCTTCTAAAAAATGTGTGGACCGTCGAGGCAAACCAGTCCACTGGTGTGGACATTGAGGGTACAGCTCTAACTAGTCAAGCTGCGCTGCAGCGTCAGGCTAGTCTGTCGTTAACTAGTGCTCTAAGCGGGAAGACTGTTGATGAGGTTTGGAGGGATATACAACAAAGCAAAGATAACAAGGATAAGAAGTCTCAGGAAAGACAGTCTACATTGGGAGAGATGACTTTGGAGGATTTCTTGGTAAAAGCAGGGATTGTAGCTGAAGCATCTAATAGGAAGAATACTGGTGCTACAGTCGGCGTTGATTCAAATGTAGTGGCGCCACAGTTTCCTCAACATGGTCCTTGGATACAGTATGCACAACCACAATATCAGCATCCACAACAAGGTTTAATGGGGATTTATATACCTGGACAGAATAAAGCACAGCCATTACACATGGGAGCTGGTGTGGCAACAGATGTTCTGTATGCAGATGGTCAGGTGGCATTGTCTTCACCTGTTATGGGAACCTTGTCAGATACTAGGAGACCTGGCAGAAAACGGGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGGCTTACACAACTGAATTGGAGCACAAAGTCTCTCGTTTGGAAGAGGAAAACGAAAAGCTGAGGAGACAGCAGGAGCTAGAGAAAATGTTGTCAAGCAATCCACCTCCTGAACCTAGATACCAGATTCGCCGAACATCATCGGCTTCATTCTGACATCTGTACCTGTAAGGACAGGTTTGTAGATATGAGGCATCAAGGGATGCTTCCTTTAGTTTAATGTGAGTTGACAACAGACTTCTTGTCTCTCAGGAATAGTAGCTATTTGATGCATTTGCATCCAACGGCTTATTTGTTCTTCTTATTAGGCTTGTCTAGTTATAACACCTCAGTGAAATCCTTGTAGTAAAAATTTCCTGGGGAACATTCTAGTTTTACCATTCATTATATAGCCTTTCTAATCATAGGTTGGGTTTATTATGAAAATCATAAAATTTTAAGCCTTTTACTAGGTCCTTTTTCCATTTAGTGACAAAAAAATATGTTGTAGAGTTTTAAATAATTTATTCATGAGAAATTAATGCAGATTATTACCAGTGGCTTTAGAGTTCGGTACAAATTCTCACATTCTTTCATGGGTGTGGGCTGAAATTCCTCTTAAGCCACAGTTTTCACATGGTAGACAACCTTATCCTGGGGAGATTTTTTATGTTTAGGGACTAGTTGAGTGGCTGTAAATGGTTGAAACTACTTGTGGTTTGAGCCTCTGCAATCTTTTAGTAAGGTTTTTGTTGGCGATCTCAATCTCAACATGTCATTGA

Coding sequences of Glyma06g47220

Limit To All Plant Sequences

>Glyma06g47220.1   sequence type=CDS   gene model=Glyma06g47220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTCAATGTGGTGGTGATAATAGTGGAAAACATTCACAACTCCAGCCTCTGGTGCCGCAAAATTCAATGTACAGCCTCACACTTGATGAAGTTCAGAATCATTTAGGTGACTTAGGGAAACCTCTAAGTAGCATGAACCTTGACGAGCTTCTAAAAAATGTGTGGACCGTCGAGGCAAACCAGTCCACTGGTGTGGACATTGAGGGTACAGCTCTAACTAGTCAAGCTGCGCTGCAGCGTCAGGCTAGTCTGTCGTTAACTAGTGCTCTAAGCGGGAAGACTGTTGATGAGGTTTGGAGGGATATACAACAAAGCAAAGATAACAAGGATAAGAAGTCTCAGGAAAGACAGTCTACATTGGGAGAGATGACTTTGGAGGATTTCTTGGTAAAAGCAGGGATTGTAGCTGAAGCATCTAATAGGAAGAATACTGGTGCTACAGTCGGCGTTGATTCAAATGTAGTGGCGCCACAGTTTCCTCAACATGGTCCTTGGATACAGTATGCACAACCACAATATCAGCATCCACAACAAGGTTTAATGGGGATTTATATACCTGGACAGAATAAAGCACAGCCATTACACATGGGAGCTGGTGTGGCAACAGATGTTCTGTATGCAGATGGTCAGGTGGCATTGTCTTCACCTGTTATGGGAACCTTGTCAGATACTAGGAGACCTGGCAGAAAACGGGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGGCTTACACAACTGAATTGGAGCACAAAGTCTCTCGTTTGGAAGAGGAAAACGAAAAGCTGAGGAGACAGCAGGAGCTAGAGAAAATGTTGTCAAGCAATCCACCTCCTGAACCTAGATACCAGATTCGCCGAACATCATCGGCTTCATTCTGA

>Glyma06g47220.2   sequence type=CDS   gene model=Glyma06g47220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTCAATGTGGTGGTGATAATAGTGGAAAACATTCACAACTCCAGCCTCTGGTGCCGCAAAATTCAATGTACAGCCTCACACTTGATGAAGTTCAGAATCATTTAGGTGACTTAGGGAAACCTCTAAGTAGCATGAACCTTGACGAGCTTCTAAAAAATGTGTGGACCGTCGAGGCAAACCAGTCCACTGGTGTGGACATTGAGGGTACAGCTCTAACTAGTCAAGCTGCGCTGCAGCGTCAGGCTAGTCTGTCGTTAACTAGTGCTCTAAGCGGGAAGACTGTTGATGAGGTTTGGAGGGATATACAACAAAGCAAAGATAACAAGGATAAGAAGTCTCAGGAAAGACAGTCTACATTGGGAGAGATGACTTTGGAGGATTTCTTGGTAAAAGCAGGGATTGTAGCTGAAGCATCTAATAGGAAGAATACTGGTGCTACAGTCGGCGTTGATTCAAATGTAGTGGCGCCACAGTTTCCTCAACATGGTCCTTGGATACAGTATGCACAACCACAATATCAGCATCCACAACAAGGTTTAATGGGGATTTATATACCTGGACAGAATAAAGCACAGCCATTACACATGGGAGCTGGTGTGGCAACAGATGTTCTGTATGCAGATGGTCAGGTGGCATTGTCTTCACCTGTTATGGGAACCTTGTCAGATACTAGGAGACCTGGCAGAAAACGGGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGGCTTACACAACTGAATTGGAGCACAAAGTCTCTCGTTTGGAAGAGGAAAACGAAAAGCTGAGGAGACAGCAGGAGCTAGAGAAAATGTTGTCAAGCAATCCACCTCCTGAACCTAGATACCAGATTCGCCGAACATCATCGGCTTCATTCTGA

Predicted protein sequences of Glyma06g47220

Limit To All Plant Sequences

>Glyma06g47220.1   sequence type=predicted peptide   gene model=Glyma06g47220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSQCGGDNSGKHSQLQPLVPQNSMYSLTLDEVQNHLGDLGKPLSSMNLDELLKNVWTVEANQSTGVDIEGTALTSQAALQRQASLSLTSALSGKTVDEVWRDIQQSKDNKDKKSQERQSTLGEMTLEDFLVKAGIVAEASNRKNTGATVGVDSNVVAPQFPQHGPWIQYAQPQYQHPQQGLMGIYIPGQNKAQPLHMGAGVATDVLYADGQVALSSPVMGTLSDTRRPGRKRGTSEDMVEKTVERRQKRMIKNRESAARSRARKQAYTTELEHKVSRLEEENEKLRRQQELEKMLSSNPPPEPRYQIRRTSSASF*

>Glyma06g47220.2   sequence type=predicted peptide   gene model=Glyma06g47220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSQCGGDNSGKHSQLQPLVPQNSMYSLTLDEVQNHLGDLGKPLSSMNLDELLKNVWTVEANQSTGVDIEGTALTSQAALQRQASLSLTSALSGKTVDEVWRDIQQSKDNKDKKSQERQSTLGEMTLEDFLVKAGIVAEASNRKNTGATVGVDSNVVAPQFPQHGPWIQYAQPQYQHPQQGLMGIYIPGQNKAQPLHMGAGVATDVLYADGQVALSSPVMGTLSDTRRPGRKRGTSEDMVEKTVERRQKRMIKNRESAARSRARKQAYTTELEHKVSRLEEENEKLRRQQELEKMLSSNPPPEPRYQIRRTSSASF*

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