Glyma06g47210 - SoyBase

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Report for Sequence Feature Glyma06g47210

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49719961
stop:	49726133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g47210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22170	AT	Annotation by Michelle Graham. TAIR10: far-red elongated hypocotyls 3 \| chr3:7822359-7825414 REVERSE LENGTH=839	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009585	GO-bp	Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0042753	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
PF04434	PFAM	SWIM zinc finger	JGI		ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_G7IVH0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAR-RED ELONGATED HYPOCOTYL n=1 Tax=Medicago truncatula RepID=G7IVH0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFM9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g47210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g47210

Paralog	Evidence	Comments
Glyma04g14850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g47210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g314300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g47210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g47210

Limit To All Plant Sequences

>Glyma06g47210.1   sequence type=CDS   gene model=Glyma06g47210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATAGATCTTCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGATGCTGGCATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGAGAAGCTTATTCATTTTACCAAGAATATGCTCGGTCGATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCCGATATGGAACAAAGCGAGAGTATGACAAATCATTTAATCGCCCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACTGGTCGAAGATCTTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGACGAATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTCGGTCTCAAGAATGAAAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTCAGGGGAGGCTAAACTCATGCTTGATTTTTTCATACAGATGCAAAACATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGACGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCGTTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCATTTTTTGTTGGAGTTAACCAGCACTACCAATTTACATTACTTGGATGTGCCCTGATATCAGACGAAAGTGCTGCCACTTTTTCTTGGCTATTTTGGACGTGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGATATGTTTCCTAATTCAAGTCATTGTGTTTGCCTATGGCATATATTAGGGAAGGTGTCTGAAAATTTATCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATTTATAGGTCCTTGACAAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGATAAGTTTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGTAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACCATCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGATTTTGTCAAACAGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACATGGAATAAAGTGGCAACCTTAAAAACTCCTTCTCCTTTGGAGAAGAGTGTTGCAGGGATTTTCACACATGCTGTATTCAAGAAGATTCAAGCTGAGGTTATTGGTGCAGTTGCTTGTCATCCTAAAGCTGACAGGCATGACGATACAACCATTGTTCACAGGGTTCATGATATGGAGACAAATAAAGACTTCTTTGTTGTGGTGAATCAAGTAAAATCTGAGTTGTCCTGTATATGTCGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGCCAGTCAGTGTTCCCCTCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATAGGAGAAGAATCAGAACACGTGCTGACTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTAAAACTTATTGAAGAGGGATCATTGTCTCAAGAGAGTTATGGTATTGCATTCCATGCGCTACATGAAGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGCAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACTGAAGACGATACCCAAAGTAGAAATATGAGCAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCAGAAGCAGAAGTGATAACAGTTGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAGCAGTTACCCTTGAAGGTTATTATGGCACACAGCAGAGCGTGCAAGGGATGTTGAACTTAATGGGACCAACACGTGATGATTATTATGGGAATCAACAGACACTTCAGGGGCTGGGACCAATAAGTTCGATACCAACAAGTCACGATGGTTATTATGGTACACATCAGGGCATGCCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATGGCATTCGGGATGATACTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCTAGACATGCATGA

Predicted protein sequences of Glyma06g47210

Limit To All Plant Sequences

>Glyma06g47210.1   sequence type=predicted peptide   gene model=Glyma06g47210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDAGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLAFFVGVNQHYQFTLLGCALISDESAATFSWLFWTWLKGVGGQVPKVIITDHDKTLKSVISDMFPNSSHCVCLWHILGKVSENLSPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDKFELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTIQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIFTHAVFKKIQAEVIGAVACHPKADRHDDTTIVHRVHDMETNKDFFVVVNQVKSELSCICRLFEYRGYLCRHALIVLQYSGQSVFPSQYILKRWTKDAKVRNIIGEESEHVLTRVQRYNDLCQRALKLIEEGSLSQESYGIAFHALHEAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEDDTQSRNMSKSNKKKNPTKKKKVNSEAEVITVGALDNLQQMDKFSTRAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGTHQGMPGLAQLDFLRTGFTYGIRDDTNVRATQLHEDPSRHA*

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