|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G20770 | AT | Annotation by Michelle Graham. TAIR10: Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628 | SoyBase | E_val: 1.00E-103 | ISS |
GO:0000303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to superoxide | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
GO:0009743 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus | SoyBase | N/A | ISS |
GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
GO:0071281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
PF04873 | PFAM | Ethylene insensitive 3 | JGI | ISS | |
UniRef100_Q948P3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: EIN3-like protein n=1 Tax=Cucumis melo RepID=Q948P3_CUCME | SoyBase | E_val: 2.00E-112 | ISS |
UniRef100_UPI0002339FBE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339FBE related cluster n=1 Tax=unknown RepID=UPI0002339FBE | SoyBase | E_val: 0 | ISS |
Glyma06g47181 not represented in the dataset |
Glyma06g47181 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.06g314000 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g47181.1 sequence type=CDS gene model=Glyma06g47181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGAAGAAGAAGAAGATGAAGATGAAGAAGAAGAAGATGATGACGATGATGATAATGGACAAAAACAAGTGTTAACGATCGAGGAACTTGAAACGAGGATGTGGAGAGACCGGATGCTGCTGAGGAAACTTAAGGATGAGAGAAAGGAGAAAGAACAAGGGCAAACAGTGGAGATGATGAAGAAGAAGGCCTTGACTCGTGCACAAGACATTGTGCTGAAGAACATGCTCAAGATGATGGAGGTTTGTGATGTAAGGGGTTTTGTTTATGGCATAATTCCTGATAAGGGGAAGCCAGTGAGTGGTGCTTCTGATAACCTTCGTGGTTGGTGGAAGGAAAGGGTTAAGTTTGATCGTAATGGTCCTGCTGCAATGCTGAGGTATGATGAAGAAACTGGGTTTGACGACCTGCGTAATGAATTCAGTGGAGACCCATCATCAGCATACCGTTTGAGTGATCTCCCAGACACAACCCTAGGGTCACTCTTGTCATGTCTGATGCAGCACTGTGATCCCCCTCAGAGGAGGTACCCTCTAGACAAGAATGTTCCCCCACCCTGGTGGCCCACCGGGCTTGAGATCTGGTGGCCCGAGCTGGGCTTTGCTGTCGACCCAGGCCCACCTCCCTACAGGAAGCCCCATGACCTCAAGAAGGTATGGAAGCAGTGCGTGCTGACCGCAGTGATCAAGCACATCTCCCCTGACATCACCAAGATCAAAAACATGGTGCGGCTTTCGAGGACCCTTCAGGACAAGCTCACTGCCAAGGAGACTGCTATTTGGAGTGCTGTTGTGAAACGTGAAGAAACCCTTGCTAGAAGATTGCACCCTCATTTGTTCCCAGCCAAACCAATTATCAGAAGGCCTCATCATGCGATTCGTGGTTATGATATTGAAGGAAGTGGTGCTCGTGCTAGGAACTTTCTTGGGGGCCAAAGTAGTCATAACCCACCACCAACTTCCAATGTTGCTGCTCATAGTAATAATAGTATGCTTCTAGCAAGTGGAACTGCTAGAAGTTTTCTTGGTGGCCAAAGTAGTCATAATCCACAACCAACAAGCAATGTTGGTAATGGTGGTGCTAGAAATTTCTTTGGGGGGCAAAATTATCCACCACTTACTAGCAATGTTGATAGTGGTGATGGTAGAAGTTTTCTGGGAGGGCAAAATAATCCACCGCCAATAACTAGCAATGTGGCTAATGGTATTAACAATAATAATAGCATGGTTACAATGAACAATGGCATTGTTTTGCCACCAGATCATGGTGCTAATAAGAGAAAGGAAGTTCAAGGCATCACAATTCCTCATGATACCTATTCCTGCCATAGCTCTCAGTGCCCTTATCATGAAACCAGCTTTGGATTCAGTGACATGAATGTGAGGAACAATCATCAGCTGGCATGCATATACAATAATGGCAACAACAACAACAACAACATTGTGCAAGTGGTTGGTGGCGGTGGTGGAGGCTCAAGCTCTTCACAGCTTGGACCTGGAAACCCTAAAAACAATGTTAATGTGGCTCTTGGTCAATCTATGCACATTGCTGCACCAGTTGTGAATCAGACTCAGACTCAGAATCTTACTATTGGTCAACCTAGGCATAGTGCTGCACCAGCTGTGAATAATCAAAACCAGACTCTTAATGTGATCAGTGACAACAATAATTCTGGAGAAATAGGGTCAAATGGTTCGATGCACAACATGAATGTTGTTGTTCCTCTAGGAAACCAAAACCAGCAGCAGGTGCAAAATGTTCTTCAGCCTCAGGTGGTGGACAGCAACAATTTCTATGGTGGTGGAAGGGTTTCTTTGGACAAGAATAATAATAATCTCTTTGGCAACAACAGCATGAATATTAATAGTGTTCCTCCTCTTCTAGTATGCCAAAACATGCAGCAGGTGCAAAGTGTTCAGCCTCAGGTTATGGACAAGAATTTCTTTGTTGGTGGAAGGGTTTCTCTGGACAAGAATAATAATAATCTCTTTGACAACAACATGAACACTTTTCCCCTTCTAGGAAGCCAAAACATGCAGCAGGTGCAAAATGTTCATGAGCCTCAGGTTATGGACAAGAGTACTTTCTTTGGTGAAAGGGTTGGTGGTGGTTACAAGCTGAATAATGCTGATCAAGTGCATGGAGATTTTTCAACATCAACATCAATGGATCCTTCTTCCTATGATCAATGGGATGCAACTAATAATTCCCAATCTGATTTTATGGACTCTCCTTTGTTGGCAGCACCGAGCCAGGATTTCCTTTGGCTATACAATTAA
>Glyma06g47181.1 sequence type=predicted peptide gene model=Glyma06g47181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIEEEEDEDEEEEDDDDDDNGQKQVLTIEELETRMWRDRMLLRKLKDERKEKEQGQTVEMMKKKALTRAQDIVLKNMLKMMEVCDVRGFVYGIIPDKGKPVSGASDNLRGWWKERVKFDRNGPAAMLRYDEETGFDDLRNEFSGDPSSAYRLSDLPDTTLGSLLSCLMQHCDPPQRRYPLDKNVPPPWWPTGLEIWWPELGFAVDPGPPPYRKPHDLKKVWKQCVLTAVIKHISPDITKIKNMVRLSRTLQDKLTAKETAIWSAVVKREETLARRLHPHLFPAKPIIRRPHHAIRGYDIEGSGARARNFLGGQSSHNPPPTSNVAAHSNNSMLLASGTARSFLGGQSSHNPQPTSNVGNGGARNFFGGQNYPPLTSNVDSGDGRSFLGGQNNPPPITSNVANGINNNNSMVTMNNGIVLPPDHGANKRKEVQGITIPHDTYSCHSSQCPYHETSFGFSDMNVRNNHQLACIYNNGNNNNNNIVQVVGGGGGGSSSSQLGPGNPKNNVNVALGQSMHIAAPVVNQTQTQNLTIGQPRHSAAPAVNNQNQTLNVISDNNNSGEIGSNGSMHNMNVVVPLGNQNQQQVQNVLQPQVVDSNNFYGGGRVSLDKNNNNLFGNNSMNINSVPPLLVCQNMQQVQSVQPQVMDKNFFVGGRVSLDKNNNNLFDNNMNTFPLLGSQNMQQVQNVHEPQVMDKSTFFGERVGGGYKLNNADQVHGDFSTSTSMDPSSYDQWDATNNSQSDFMDSPLLAAPSQDFLWLYN*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||