Report for Sequence Feature Glyma06g46950
Feature Type: gene_model
Chromosome: Gm06
Start: 49490449
stop: 49493761
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g46950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G10800 AT
Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6643678-6644529 FORWARD LENGTH=283
SoyBase E_val: 6.00E-84 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B9RYR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYR3_RICCO
SoyBase E_val: 4.00E-129 ISS
UniRef100_I1KFL2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KFL2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g46950
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g46950
Paralog Evidence Comments
Glyma04g15330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g46950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g312400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g46950
Coding sequences of Glyma06g46950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g46950.1 sequence type=CDS gene model=Glyma06g46950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCATGTCAAAAATACCTAAGATTAAACCAGGAGATGTAAGCACTACAAAAGATATATTTGTTTCAGCTGTTCGCTTTGCCATGTCTATTGAGAGACCATGTTTTCCGTTTGGAGATGAGCTGCGAATCTCTGCTCAAGAGCAAATTGACTACATGCTAGGAGAAGATGGAGATACTACAATCATCATGGCTGATGATGAAGTACAATCAATAGTAAGAATGGGTGTTTATAACATCATTCATTCATTTGAAATGGATTTGTCTTCCTTGCTTTTGGACCCTACCCTTGAGCTTGAGGGTGTGTATGATAGGATAATGAAAAGGGTATCTGATCTTGAATGGATGTGTAATGTACTCCCAAAGATGGATCTAATGAAGAATTTTGTTTCTAACTGGGCTGCAATCTCAAGTAAAATTTTGGGGATTATTGAAGACAAAAAACTAGACCATGTCATGTGGGGGCTGAAAGTGAAATTGATAGAAGTAGCATGTAAAGTTTTGGAAGCAGTTGCTTATGGTAGCGTGATTCTTCCAGCTCCATGTCGGGTGCAATTGCTAAAGACCTGGTTTCCATATCTTCGGAAGATGAAGCCTTTACTGGATTCAAAAGCCGTTGAGGAGACTGGTTTTCCTTACAAAATGGATGAAGATTTGAGTCAGGCCATTGAGGGAGCAATAGTGTCACTGATATTGACATTGCCATCAAATGATCAAGCAGACATCTTGGCAGACTGGATCAAAAACCGGGAAGTTGGATATCCTGACTTGAGCGAGGCTTTTGAGGTCTGGTGTTATAGAACCAAATCTGCCAAAAGGAGATTAGTAGAAGGTTTAGATGGCCATGGTGATGGTGCTGCCAGCAGCTGA
Predicted protein sequences of Glyma06g46950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g46950.1 sequence type=predicted peptide gene model=Glyma06g46950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAMSKIPKIKPGDVSTTKDIFVSAVRFAMSIERPCFPFGDELRISAQEQIDYMLGEDGDTTIIMADDEVQSIVRMGVYNIIHSFEMDLSSLLLDPTLELEGVYDRIMKRVSDLEWMCNVLPKMDLMKNFVSNWAAISSKILGIIEDKKLDHVMWGLKVKLIEVACKVLEAVAYGSVILPAPCRVQLLKTWFPYLRKMKPLLDSKAVEETGFPYKMDEDLSQAIEGAIVSLILTLPSNDQADILADWIKNREVGYPDLSEAFEVWCYRTKSAKRRLVEGLDGHGDGAASS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
