SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33970 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342 | SoyBase | E_val: 2.00E-105 | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| PTHR10903 | Panther | AIG1 | JGI | ISS | |
| PTHR10903:SF2 | Panther | AIG1 | JGI | ISS | |
| PF04548 | PFAM | AIG1 family | JGI | ISS | |
| UniRef100_B9R8X8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aig1, putative n=1 Tax=Ricinus communis RepID=B9R8X8_RICCO | SoyBase | E_val: 1.00E-138 | ISS |
| UniRef100_UPI0002339E5F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339E5F related cluster n=1 Tax=unknown RepID=UPI0002339E5F | SoyBase | E_val: 0 | ISS |
|
Glyma06g46920 not represented in the dataset |
Glyma06g46920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g312100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g46920.2 sequence type=transcript gene model=Glyma06g46920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTATTAGTTGTAATTACATTATATGTTCATATATATATGTGTGTGTGTGTTTAATTTATTCTATTGCTAAATTTTTATTTATGATATATTTTCCTTGCAGCTGTAACCTAAATTTGTTACTATCAATGGCAAAAACATCCTCGTCTAATGAAGTTAGGACACTAGTTTTAGTCGGACGTACTGGCAATGGCAAGAGTGCAGTAGGAAATAGTGTTCTTGGAAGGAGAGCCTTCAAATCGAAGTCAAGCTCCTCTGGTGTAACACGTGTTTGTGAATTGCAAAGAACTATTATAAAGGATGGACCAATTGTTAATGTTATTGACACCCCAGGACTATTTGATGGAACTCATTCTGCAGGAAAGGAAATAGTCAAATGTATTGATATGGCCAAGGATGGAATTCATGCTATTCTTATGGTATTCTCTGTTAAAACTCGTTTTTCTGAAGAAGAACAAGCTACATTTCTTGCCTTGCAAGCATTGTTTGGCCACAAAATTGTTGACTATATGATCGTGGTTTTCACCGGAGGAGATGAGCTAGAAGAAAATGAGGAGACACTTGATGATTATTTAGGTCATGAGTGTCCACAACCTCTTAAGGATATTATGATCCTATGTGGCAATCGTAAACTACTTTTTGATAATAAGACTAAGGATAAAGAAAAGCAATTAGGACAAGTTCAACAACTTCTTACTCTCGTCGACATGGTTATATCACAAAATGGTGGACTACCATTTACAAACGAGTTATTTATAGAATTAAAGGAGAAAGCAACAATGCGGGATAACCAACAAAAAGCACTTGACTCCTTAAAAGGATATTCAAAAGAAGAAATGTTTGAGATTAAAATGCAAATGCAACAAAAATATGACGACGAGCTAAAACGAATGATTAATATGGTTGAATCAAAGTTGAAGGAAGAAACTGCAAATCTTTTGAAAAAATTGGAAGAAGAAAGAGTTGCTAGACTTAAGGCTGAGGAAAACTATAGGTCATTTCAAAATGCATCAAATGATGAAATTCGAAGACTTAAAGAAGATCTAGAAAAGGCAAATAGAAGAAGAGATCCTGGGCTTCCTTTTCCATTTAACCTATTGATTCCTTTCCGGGGTAGGAGACCAATTCCACCTCCTTGTCCCATTCTTTGATTTATAGCACCTTCTTAAACATTTCTATTATACTTGCATGGTTGTAATTAAGTGTATGGATTATACTCGTCTAAATGTTGTAAATATTTACTAAGGATTGCAATGTGTAACTAAACTGTGGTGTTTGTGTTTGCATTGAACTTGTTAATTTATCATCATTT
>Glyma06g46920.1 sequence type=CDS gene model=Glyma06g46920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAAACATCCTCGTCTAATGAAGTTAGGACACTAGTTTTAGTCGGACGTACTGGCAATGGCAAGAGTGCAGTAGGAAATAGTGTTCTTGGAAGGAGAGCCTTCAAATCGAAGTCAAGCTCCTCTGGTGTAACACGTGTTTGTGAATTGCAAAGAACTATTATAAAGGATGGACCAATTGTTAATGTTATTGACACCCCAGGACTATTTGATGGAACTCATTCTGCAGGAAAGGAAATAGTCAAATGTATTGATATGGCCAAGGATGGAATTCATGCTATTCTTATGGTATTCTCTGTTAAAACTCGTTTTTCTGAAGAAGAACAAGCTACATTTCTTGCCTTGCAAGCATTGTTTGGCCACAAAATTGTTGACTATATGATCGTGGTTTTCACCGGAGGAGATGAGCTAGAAGAAAATGAGGAGACACTTGATGATTATTTAGGTCATGAGTGTCCACAACCTCTTAAGGATATTATGATCCTATGTGGCAATCGTAAACTACTTTTTGATAATAAGACTAAGGATAAAGAAAAGCAATTAGGACAAGTTCAACAACTTCTTACTCTCGTCGACATGGTTATATCACAAAATGGTGGACTACCATTTACAAACGAGTTATTTATAGAATTAAAGGAGAAAGCAACAATGCGGGATAACCAACAAAAAGCACTTGACTCCTTAAAAGGATATTCAAAAGAAGAAATGTTTGAGATTAAAATGCAAATGCAACAAAAATATGACGACGAGCTAAAACGAATGATTAATATGGTTGAATCAAAGTTGAAGGAAGAAACTGCAAATCTTTTGAAAAAATTGGAAGAAGAAAGAGTTGCTAGACTTAAGGCTGAGGAAAACTATAGGTCATTTCAAAATGCATCAAATGATGAAATTCGAAGACTTAAAGAAGATCTAGAAAAGGCAAATAGAAGAAGAGATCCTGGGCTTCCTTTTCCATTTAACCTATTGATTCCTTTCCGGGGTAGGAGACCAATTCCACCTCCTTGTCCCATTCTTTGA >Glyma06g46920.2 sequence type=CDS gene model=Glyma06g46920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTATTAGTTGTAATTACATTATATGTTCATATATATATGTGTGTGTGTGTTTAATTTATTCTATTGCTAAATTTTTATTTATGATATATTTTCCTTGCAGCTGTAACCTAAATTTGTTACTATCAATGGCAAAAACATCCTCGTCTAATGAAGTTAGGACACTAGTTTTAGTCGGACGTACTGGCAATGGCAAGAGTGCAGTAGGAAATAGTGTTCTTGGAAGGAGAGCCTTCAAATCGAAGTCAAGCTCCTCTGGTGTAACACGTGTTTGTGAATTGCAAAGAACTATTATAAAGGATGGACCAATTGTTAATGTTATTGACACCCCAGGACTATTTGATGGAACTCATTCTGCAGGAAAGGAAATAGTCAAATGTATTGATATGGCCAAGGATGGAATTCATGCTATTCTTATGGTATTCTCTGTTAAAACTCGTTTTTCTGAAGAAGAACAAGCTACATTTCTTGCCTTGCAAGCATTGTTTGGCCACAAAATTGTTGACTATATGATCGTGGTTTTCACCGGAGGAGATGAGCTAGAAGAAAATGAGGAGACACTTGATGATTATTTAGGTCATGAGTGTCCACAACCTCTTAAGGATATTATGATCCTATGTGGCAATCGTAAACTACTTTTTGATAATAAGACTAAGGATAAAGAAAAGCAATTAGGACAAGTTCAACAACTTCTTACTCTCGTCGACATGGTTATATCACAAAATGGTGGACTACCATTTACAAACGAGTTATTTATAGAATTAAAGGAGAAAGCAACAATGCGGGATAACCAACAAAAAGCACTTGACTCCTTAAAAGGATATTCAAAAGAAGAAATGTTTGAGATTAAAATGCAAATGCAACAAAAATATGACGACGAGCTAAAACGAATGATTAATATGGTTGAATCAAAGTTGAAGGAAGAAACTGCAAATCTTTTGAAAAAATTGGAAGAAGAAAGAGTTGCTAGACTTAAGGCTGAGGAAAACTATAGGTCATTTCAAAATGCATCAAATGATGAAATTCGAAGACTTAAAGAAGATCTAGAAAAGGCAAATAGAAGAAGAGATCCTGGGCTTCCTTTTCCATTTAACCTATTGATTCCTTTCCGGGGTAGGAGACCAATTCCACCTCCTTGTCCCATTCTTTGA
>Glyma06g46920.1 sequence type=predicted peptide gene model=Glyma06g46920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKTSSSNEVRTLVLVGRTGNGKSAVGNSVLGRRAFKSKSSSSGVTRVCELQRTIIKDGPIVNVIDTPGLFDGTHSAGKEIVKCIDMAKDGIHAILMVFSVKTRFSEEEQATFLALQALFGHKIVDYMIVVFTGGDELEENEETLDDYLGHECPQPLKDIMILCGNRKLLFDNKTKDKEKQLGQVQQLLTLVDMVISQNGGLPFTNELFIELKEKATMRDNQQKALDSLKGYSKEEMFEIKMQMQQKYDDELKRMINMVESKLKEETANLLKKLEEERVARLKAEENYRSFQNASNDEIRRLKEDLEKANRRRDPGLPFPFNLLIPFRGRRPIPPPCPIL* >Glyma06g46920.2 sequence type=predicted peptide gene model=Glyma06g46920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFISCNYIICSYIYVCVCLIYSIAKFLFMIYFPCSCNLNLLLSMAKTSSSNEVRTLVLVGRTGNGKSAVGNSVLGRRAFKSKSSSSGVTRVCELQRTIIKDGPIVNVIDTPGLFDGTHSAGKEIVKCIDMAKDGIHAILMVFSVKTRFSEEEQATFLALQALFGHKIVDYMIVVFTGGDELEENEETLDDYLGHECPQPLKDIMILCGNRKLLFDNKTKDKEKQLGQVQQLLTLVDMVISQNGGLPFTNELFIELKEKATMRDNQQKALDSLKGYSKEEMFEIKMQMQQKYDDELKRMINMVESKLKEETANLLKKLEEERVARLKAEENYRSFQNASNDEIRRLKEDLEKANRRRDPGLPFPFNLLIPFRGRRPIPPPCPIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
